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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678457788 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB_related | ||||||||
Protein Properties | Length: 1479aa MW: 163675 Da PI: 7.0412 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.3 | 3.2e-07 | 854 | 895 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e+++ + +G++ + +Ia+ + ++t +c+++++k 678457788 854 PWTAEEREIFIGKLAAFGKD-FQRIASFLD-HKTIADCVEFYYK 895 8*****************99.*********.***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.64E-12 | 846 | 899 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.253 | 850 | 901 | IPR017884 | SANT domain |
SMART | SM00717 | 2.4E-7 | 851 | 899 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-4 | 854 | 895 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 11.954 | 1033 | 1084 | IPR017884 | SANT domain |
SMART | SM00717 | 3.7E-6 | 1034 | 1082 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.2E-10 | 1034 | 1084 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-4 | 1035 | 1078 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.24E-5 | 1038 | 1076 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1479 aa Download sequence Send to blast |
MPPEQLPWDR RDFRKHERSA SDTRFVSGSG GFGSRWRDPH DPHAPPPRSS HPPAHHHYQN 60 PQQPQRWYSG FRSSRPIVNV HHCCLLFGKV FSFMDAVNWT VLGHGKQGEW HVYSDEAARG 120 YLPFGSRHND RSFEDDGSRH LGRHGDERYV RNSRESRGVF THREWRSPNC RISAGSSGSG 180 KHIGEVGNQK PQEHAPCHNN QSNSGDAAIP VTFLPLDQHK SDLKVNCEDG PSCKSGSCKS 240 GQNIAPSSSL EKPLVELNSH RPIANASMPY NNGKVDELTT AVTVSPLHQH PPVSNEKHED 300 FGGADDVTRS VQRFEKENTL GSIDWRFLKW SRSGSLSSKC SSHGSFSSSK EDEAHHTSSM 360 GACAAYTVPR PSDNTNSRKK PRLGWGEGLA KYESKKVEGP DNVPEKIDLF SIPNTDTSHS 420 PSGNLRDKSP IHTNLPMSST SPSSVTCSFS PGMEEHESIK VAGIDQINAS IKSALGILPI 480 ADYKEPSFNL GSIDELSSVT NLSDLVNGLL QSNDQGWIET GYVKSTSMNT LLVWKANVLK 540 VLEVTESEID SLETQFRSLL GDSRSCCPHP SVRQSSTGDC GIIPCSKMFN ASSFTTGPSL 600 LNLAVPKDVN TGDPTCELED GKADSPLSNS CKLVDASLPK LFFKTLKHIE YPSTDPINSL 660 NSDQMYCRDV GDIYDSIISS NKDVASKVSD DLNKLLPFLG CSFDASTSSH ASSFQRSPLN 720 IKEKIMKRRQ ILQFSERVLI IKYNVFHHFW KEGRIVSLKK NRRKPHKKFD LFQTMCSIYR 780 SSSHSVGSLP KVPAEEIVDM VNSLLSNFPF KPCRSTLKMP SLILDRNTKS RFISNNGLVD 840 DPFADERERS VLNPWTAEER EIFIGKLAAF GKDFQRIASF LDHKTIADCV EFYYKNHKSE 900 CFSRAKRKSD CTKKKSRSSM YLVGARKMYR DSNAVSLDIL GEVANASNYI ETQLKYKSRI 960 YLGSSGFQNS PSGVCGSLSS EAMDSCITTS CDPADGNQEW KIQRQSLCIR RPLTPEITHC 1020 VDDESLEESC GEIDSTDWTD KEKSMFIHAV SVYGKDFLMI SRFLRTRSRD QCRIFFSKAR 1080 KCLRLDVIQP PEACIASDST GVDGGDTEGV CVMQNDSSIC NIISQEPFDD KPVKENKVSS 1140 GHEACAEVET TVESGSVVSK NVQKNDFFTS AEELKDNDTE KTGIMSCKVP IVSFTCDRTM 1200 TEHQQVSNES STVDAVSYML PKSDENGNAC DGKTSCAMPL QKNDLSRYMC SSSMLFPVPI 1260 KYQENSCSGD DFQNVCSRGV DAVHSQILRK TGCPSRHSVS FQSNPSNIPN GYHVSVTTCE 1320 RITWEADNKT QITSHCEECE HPRHQNDTAP QQLHFPGQNG TLPRCQSGED KPSRNGDLKL 1380 FGKVMITLEA KSISAESDGD GKCHKQEPLN PSSGTICPRL PDTTATLGLD HSSLHTIVKS 1440 SDCLPDGASV LPGKFLSRCN GLPGANVLQN LKQPQDDSG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 757 | 764 | LKKNRRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678457788 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A022RLK2 | 0.0 | A0A022RLK2_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F01767.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5904 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-92 | MYB family protein |