PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678457765 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 690aa MW: 74481.5 Da PI: 4.9756 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 416.9 | 1.7e-127 | 312 | 667 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +lLl+cAeavs ++le+a+++L ++s+la+p g++ qR+aayf eA++ar+++s+ ++y++lp+ + s + +a+++f+ +sP++kfsh+taNqa 678457765 312 LTLLLQCAEAVSGDNLEEANKILLEISQLATPFGTSAQRVAAYFSEAMSARIVSSCLGMYSSLPAVPHS----HKLSSAFQIFNGISPFIKFSHFTANQA 407 579*************************************************************99996....7888999******************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 I ea+ege+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g+ ske+le+tg+rL++fAe+lg+pfef + + +++ +l++++L+++++Ea 678457765 408 IQEAFEGESRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGN----SKEALEATGKRLSDFAERLGLPFEFFP-LPEKVGNLDPDKLSLSKREA 502 ************************************************....***************************.599***************** PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 +aV++ h+l+d ++s ++ +L+++++lsPkvv+vveq+++h ++sFl rf+ea++yysalfdsl a +++eseer++vE++ll+rei+n++a 678457765 503 VAVHWLQ--HSLYDVTGSDAN----TLWFLQRLSPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGACYGEESEERHVVEQQLLSREIRNLLAVG 595 ******9..999999999999....**********************.899************************************************* PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 g +r + + + +Wre+le++GF++v+ls +aa+qa lll +++sdgy++ e++g+l lgWkd L+++SaWr 678457765 596 GPARSGEVK-FDNWREKLEQSGFRSVSLSGNAAAQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWR 667 ***888776.**************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.53 | 285 | 647 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.0E-125 | 312 | 667 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 690 aa Download sequence Send to blast |
MVRKRSAGEM MEIVEIPAAG EDRFPRRSAL LYGSCSDSNP NAAMTSQQSV PVTTNFSPMV 60 SPPSANFDVL MAAANSGSGS GVGDSSPVVL ENSGGTPPSM CVFSGLPLFP PERNTGLQLL 120 SPTTSYSTVD DDRTAWVDAV IKDLVQSSNN GVSIPQLILN VRDIIHPCNP NLPNLLEQRL 180 RALSNGPLKD TLPPVSFLRQ QESNNNLLIP PPPEQLSQWP PQPPPTQGIV ITPTSSSAAA 240 TALPSFLPPL TVLPTPRPPA AAETAEKSVS PEALTTAPPP PTVAAGPFPE PVRQKKEEIR 300 HQQRDEEGLH LLTLLLQCAE AVSGDNLEEA NKILLEISQL ATPFGTSAQR VAAYFSEAMS 360 ARIVSSCLGM YSSLPAVPHS HKLSSAFQIF NGISPFIKFS HFTANQAIQE AFEGESRVHI 420 IDLDIMQGLQ WPGLFHILAS RPGGPPFVRL TGLGNSKEAL EATGKRLSDF AERLGLPFEF 480 FPLPEKVGNL DPDKLSLSKR EAVAVHWLQH SLYDVTGSDA NTLWFLQRLS PKVVTVVEQD 540 LSHAGSFLGR FVEAIHYYSA LFDSLGACYG EESEERHVVE QQLLSREIRN LLAVGGPARS 600 GEVKFDNWRE KLEQSGFRSV SLSGNAAAQA TLLLGMFPSD GYTLVEDNGT LKLGWKDLCL 660 LTASAWRPPA GELIRSLLIT DGWSSGDISV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 0.0 | 295 | 668 | 3 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678457765 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101980.1 | 0.0 | protein SCARECROW | ||||
Swissprot | Q2Z2E9 | 0.0 | SCR_IPONI; Protein SCARECROW | ||||
TrEMBL | A0A2G9G7V0 | 0.0 | A0A2G9G7V0_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_001737m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8258 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 0.0 | GRAS family protein |