PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678457719
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 549aa    MW: 60395.3 Da    PI: 5.4439
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678457719genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3696.5e-22147247299
                EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 k+lt+sd+++ g +++p+ +ae++         ++++   l+ +d +g  W++++iyr++++r++lt+GW+ Fv +++L +gD++ F   + +++ l+v
  678457719 147 AKTLTQSDANSGGGFSVPRYCAETIfppldygADPPAQ--SLIARDIHGHAWKFRHIYRGTPRRHLLTTGWSTFVTQKRLVAGDSIAFL--QAENGDLRV 242
                599***************************95445555..6999*********************************************..5599999** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +++r+
  678457719 243 GIRRA 247
                **997 PP
2Auxin_resp103.72.2e-34281363283
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a  a+++ +FevvY+P+a+t+eF+v++++v +a+++++++G Rfkm fe+edss++++ +Gtv++v+ +dp rWp+S+Wr+L+
   678457719 281 AFLAANGRPFEVVYYPQAGTPEFCVRASSVTEAMRIQWCPGLRFKMPFENEDSSRISWfMGTVAAVQFYDPQRWPGSPWRLLQ 363
                 567899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0019702836IPR0060582Fe-2S ferredoxin, iron-sulphur binding site
SuperFamilySSF1019369.81E-30136252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-36139253IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.351146248IPR003340B3 DNA binding domain
SMARTSM010194.5E-16146248IPR003340B3 DNA binding domain
PfamPF023628.1E-20147247IPR003340B3 DNA binding domain
CDDcd100178.78E-20148246No hitNo description
PfamPF065071.8E-29281363IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MDVFSMSIVV YCGADRVDSD GTMPSLCCGR GLCSICKAMV ESDTSVDVEL WHACAGGTVE  60
IPTVNTRVFY FPQGHAEHAL GAVDFGSPGR IPPLILCRVG YVKYLADPET DEVYARTGLI  120
PLKNDEVLGF HDGSTMCESS ENPMSLAKTL TQSDANSGGG FSVPRYCAET IFPPLDYGAD  180
PPAQSLIARD IHGHAWKFRH IYRGTPRRHL LTTGWSTFVT QKRLVAGDSI AFLQAENGDL  240
RVGIRRAKRE SGASSLWNNA VANMADEKTA RVRAEAVAEA AFLAANGRPF EVVYYPQAGT  300
PEFCVRASSV TEAMRIQWCP GLRFKMPFEN EDSSRISWFM GTVAAVQFYD PQRWPGSPWR  360
LLQVIWDEPD LLQNVKSVSP WLVEMVSRVP PISISNISSP RTNLRLPHPM GFSANGQLPI  420
PSFLGNPLRP SSCIRDNFTA GIQGARQYNH AHGTPLSSDL HLSNEMQMDL LPPSFPQHDV  480
ADIKTSGITD DDEDIPCLLS MGCNTSEAKS EKMDNGARIP SFILFGQPIL TEQQMSSQDQ  540
QSSEQFLQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-814638451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap678457719
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089918.10.0auxin response factor 18-like
RefseqXP_020552218.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A191T8S30.0A0A191T8S3_SALMI; Auxin response factor
STRINGXP_010253698.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-164auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]