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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678456702 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | CO-like | ||||||||
Protein Properties | Length: 370aa MW: 40342.6 Da PI: 4.9544 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.5 | 2.4e-07 | 26 | 68 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C +++++++ l C+d ++ lC++C H g H+++ 678456702 26 LICGRCSSQPAFLRCFDESMSLCQNCDWLVHAGsgktssHKRE 68 68*************************9999878888888876 PP | |||||||
2 | CCT | 63.7 | 5.7e-22 | 313 | 356 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+k RkFeKk+rY+sRKa+A+ R RvKGrFvk+ 678456702 313 RTDAVMRYKEKKKARKFEKKVRYASRKAMADVRRRVKGRFVKAG 356 889**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00021 | 1.34E-5 | 27 | 70 | No hit | No description |
PROSITE profile | PS51017 | 15.348 | 313 | 355 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.9E-17 | 313 | 355 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MASLCLSCDH NVHSANALSK RHSRTLICGR CSSQPAFLRC FDESMSLCQN CDWLVHAGSG 60 KTSSHKREAI RCYSGCPSVS EPSAMVSFLV DLRSVGDSVC ENGMGSTSNG DKPSDLQESQ 120 GNDKPENASN FVEPGTSLND MDSASFWLDN VDNLASYSSI TPKAFTSGEK ELSGFCDDFN 180 MDEVDASIEN YDAFLDTALN NPEEFFNDDD IDGLFGPKYM SGFNCQDVTP AAEVSSEGGM 240 RLRPECSTAA SADSIISCKT EPNLFLGRQH SSISFSGITG GDHHDCGVSS MPAVGAPQWL 300 PPTHENSMPS SSRTDAVMRY KEKKKARKFE KKVRYASRKA MADVRRRVKG RFVKAGDAYD 360 FDPLEETRSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678456702 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100551.1 | 1e-137 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_011100552.1 | 1e-137 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_011100553.1 | 1e-137 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9LUA9 | 3e-94 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A068LFB8 | 1e-141 | A0A068LFB8_TECGR; CONSTANS-like protein 9 | ||||
STRING | XP_009768363.1 | 1e-125 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1270 | 24 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 6e-87 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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