PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678456445

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Dof

Protein Properties

Length: 455aa MW: 48895.6 Da PI: 5.9171

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678456445	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.5	2.9e-38	118	178	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG +rn+PvG+grrk k+ss 678456445 118 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGMMRNLPVGAGRRKTKNSS 178 7899*****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	115	175	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-31	120	176	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.267	122	176	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	124	160	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MEPKIKLFGS KIMFPDVAEA SEGSGGYGCD SSSGESGGDD DGGKILQAEE EERVAETSER 60 DELERNEFSV TSADEPQNPG TVRSSDENPN EEGEAVSAVD LTNGNDGKNM QQKPLKKPDK 120 ILPCPRCNSM DTKFCYYNNY NINQPRHFCK SCQRYWTAGG MMRNLPVGAG RRKTKNSSSH 180 CHHIAISEAL GGARMDDSSN PHLPAMKAGS TVLSFSPDSS LCESIASGLK LADKRAQNGP 240 GNGVYNGGKI VSPVPCMNKD SNGGDASSKG AAQVPIPQNL NGFSSPVPCI PSVAWTYPMN 300 PAVPIPAIYP MPFFPPPYWN CAVPNPWVVP WLPVMSPSPD HNATSFAPAS PLGKHSRNGE 360 LLKSKKPESE DPTEPEKSEG SIVVPKTLRV GDPEEAAKSS IWKTLGIKYD SLSREGLFKA 420 LQPKDQKENA PHSTSQALQA NPAALSRSMT FQETA

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MEPKIKLFGS KIMFPDVAEA SEGSGGYGCD SSSGESGGDD DGGKILQAEE EERVAETSER  60
DELERNEFSV TSADEPQNPG TVRSSDENPN EEGEAVSAVD LTNGNDGKNM QQKPLKKPDK  120
ILPCPRCNSM DTKFCYYNNY NINQPRHFCK SCQRYWTAGG MMRNLPVGAG RRKTKNSSSH  180
CHHIAISEAL GGARMDDSSN PHLPAMKAGS TVLSFSPDSS LCESIASGLK LADKRAQNGP  240
GNGVYNGGKI VSPVPCMNKD SNGGDASSKG AAQVPIPQNL NGFSSPVPCI PSVAWTYPMN  300
PAVPIPAIYP MPFFPPPYWN CAVPNPWVVP WLPVMSPSPD HNATSFAPAS PLGKHSRNGE  360
LLKSKKPESE DPTEPEKSEG SIVVPKTLRV GDPEEAAKSS IWKTLGIKYD SLSREGLFKA  420
LQPKDQKENA PHSTSQALQA NPAALSRSMT FQETA

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678456445

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087240.1	1e-165	cyclic dof factor 1
TrEMBL	A0A2G9HCF7	1e-153	A0A2G9HCF7_9LAMI; Uncharacterized protein
STRING	XP_009587736.1	1e-153	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	4e-72	cycling DOF factor 3