PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678455859
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 664aa    MW: 74233.8 Da    PI: 6.3974
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678455859genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.5e-23127227198
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+k+lt sd++++g +++ +++a+++     +++++ s++l+  d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F   + +++el+v+
  678455859 127 FCKTLTASDTSTHGGFSVLRRHADDClpqldMSQQPPSQELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--RGENAELRVG 224
                99*****************************55566678*************************************************..4499999*** PP

                EE- CS
         B3  96 vfr 98 
                v+r
  678455859 225 VRR 227
                997 PP
2Auxin_resp115.16.1e-38253335183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t+s+F+v+Y+Pr+s+seF+++v+k+++a ++k+svGmRfkm+fe+e+++er++sGt+vg++  d++ Wp+S+WrsLk
   678455859 253 ASHAITTGSMFSVFYKPRTSRSEFIISVNKYLEAQNNKLSVGMRFKMRFEGEEVPERKFSGTIVGIESDDSSPWPDSEWRSLK 335
                 789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-43118256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-40122242IPR015300DNA-binding pseudobarrel domain
CDDcd100177.25E-21125227No hitNo description
SMARTSM010191.3E-19127229IPR003340B3 DNA binding domain
PfamPF023622.9E-21127227IPR003340B3 DNA binding domain
PROSITE profilePS5086311.561127229IPR003340B3 DNA binding domain
PfamPF065072.8E-35253335IPR010525Auxin response factor
PfamPF023095.2E-13531632IPR033389AUX/IAA domain
SuperFamilySSF542772.11E-12536618No hitNo description
PROSITE profilePS5174525.892539623IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MARLSANNFN GGPPVGPPND ALYRELWHAC AGPIVSVPRE GERVYYFPQG YMEQLEASTN  60
HGLEQQLPSF DLPSKILCKV MHVQLRAEPD TDEVYAQITL LPEPDQGLVT SPDPPAPEPP  120
RCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPQLDMSQ QPPSQELVAS DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGENAE LRVGVRRLMR QLNNMPSSVI  240
SSHSMHLGVL ATASHAITTG SMFSVFYKPR TSRSEFIISV NKYLEAQNNK LSVGMRFKMR  300
FEGEEVPERK FSGTIVGIES DDSSPWPDSE WRSLKVQWDE PSSIVRPDKI SPWEVEPLVA  360
ATPPNSQTQQ RAKRTRPAVL NSSTPELSSL GVRKLPSDPP AFSYRDPLRG RELYQSPKHS  420
SAARASNMNF ESLLPTSSNS MYQSTRMEAA AESLTPVSEK RQMTRCRLFG IELLDHPADE  480
DAMLAGPSGA VAENHCPPLY AESEQQSEPS NHNPSNVSCD PEKSSVRSPH ETTLSRQNRS  540
CTKVHMQGIA VGRAVDLTKF YCYEELLKKL EDLFEIAGEL TGTTKKWQVV YTDDEGDMMM  600
VGDDPWHEFC TMVKNKKIYI YTSEEAKMLS PRIKLPLGEF KSSKLHLEAI VGPEEQSSTL  660
GSEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.043581355Auxin response factor 1
4ldw_A0.043581355Auxin response factor 1
4ldw_B0.043581355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678455859
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087626.10.0auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A2G9HMH60.0A0A2G9HMH6_9LAMI; Auxin response factor
STRINGMigut.B00723.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58381923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]