PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678455599
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family CO-like
Protein Properties Length: 403aa    MW: 45107.7 Da    PI: 6.9574
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678455599genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.45.3e-074383240
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg...Htvv 40
               + ++C+++  +++ + C +++  lC+dC    H +   H ++
  678455599 43 RSQICDNCAAQPAGIRCATDGLVLCQDCDWDAH-RcanHLRS 83
               5689*************************9999.43667665 PP
2CCT63.85e-22357400144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Re a+ RYkeKrktR+++++irYesRKa+A++R+RvKGrFvk++
  678455599 357 REDAVIRYKEKRKTRRYDNHIRYESRKARADTRKRVKGRFVKAT 400
                99****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.542146IPR000315B-box-type zinc finger
SMARTSM003363.6E-6146IPR000315B-box-type zinc finger
CDDcd000212.04E-5446No hitNo description
PROSITE profilePS501199.5994285IPR000315B-box-type zinc finger
PfamPF006431.1E-54484IPR000315B-box-type zinc finger
CDDcd000212.50E-54685No hitNo description
SMARTSM003360.464785IPR000315B-box-type zinc finger
PfamPF062034.0E-17357399IPR010402CCT domain
PROSITE profilePS5101714.942357399IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MVGCDFCCDR TAILFCRADS AKLCLSCDHQ VHTANALAKK HHRSQICDNC AAQPAGIRCA  60
TDGLVLCQDC DWDAHRCANH LRSPLEGFTG SPSPFELAPS WGAEKKSPPH EWSGFLEELM  120
VPISSDYGGK SLTYGKHKQA ILEQLLELLS QNGAGTSRDM EEMVPSTPPC NGSWHLENFC  180
ETTQEKKPSP QSQSSSTTTM LTQPVPKQEP WNNTSSRARI WDFNLGQLRG QDEHSPEQIE  240
YSDGNLLFND NSYSELLPNE ASSAKRPGVK IPVVDFSIPN KDMIPFVATA NVNHMLGQWP  300
AISESKDLQA SEEGNSRKGS YDGLIKLHFG DQPVPLQNDS MSSSMMKANM ELMAKNREDA  360
VIRYKEKRKT RRYDNHIRYE SRKARADTRK RVKGRFVKAT EEP
Cis-element ? help Back to Top
SourceLink
PlantRegMap678455599
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086854.21e-133LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A2G9I1Y51e-126A0A2G9I1Y5_9LAMI; Uncharacterized protein
STRINGMigut.K01031.1.p1e-118(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67032126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.16e-80B-box type zinc finger protein with CCT domain