PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678453843

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 296aa MW: 34222.4 Da PI: 9.2168

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678453843	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.2	9.9e-51	2	126	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102 pGfrFhPt+eelv +yL++kvegk++++ e i+++d+y+++Pw+Lp+ + +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++++ +gl 678453843 2 PGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITSLDLYSYDPWELPALAVVGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRLIRSESHRSIGL 100 9*************************.89***********7666789******************************************* PP NAM 103 kktLvfykgrapkgektdWvmheyrl 128 kktLvfy+g+apkg++t+W+m+eyrl 678453843 101 KKTLVFYSGKAPKGTRTRWIMNEYRL 126 **********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.678	1	147	IPR003441	NAC domain
SuperFamily	SSF101941	2.22E-56	2	146	IPR003441	NAC domain
Pfam	PF02365	7.2E-26	2	126	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MPGFRFHPTE EELVEFYLRR KVEGKRFNVE LITSLDLYSY DPWELPALAV VGEKEWYFYV 60 PRDRKYRNGD RPNRVTTSGY WKATGADRLI RSESHRSIGL KKTLVFYSGK APKGTRTRWI 120 MNEYRLPQHD PDLTRKAEIS LCRVYKRAGL QNQSHFPRSL PAKTSRSFPE SEPELNNTED 180 LQMNFKGKAR KTTKDVGHCF AHLRQNNYCI NPLRADSSGS EIPLVTSHFH AVDDELQKLV 240 SNCSQQDAAP IRKEGPHFHS NFVSYLPESN NDLSSAAPSD RLWDWNGILD AGNHFM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-57	2	147	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-57	2	147	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-57	2	147	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-57	2	147	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-57	2	147	22	168	NAC domain-containing protein 19
3swm_B	2e-57	2	147	22	168	NAC domain-containing protein 19
3swm_C	2e-57	2	147	22	168	NAC domain-containing protein 19
3swm_D	2e-57	2	147	22	168	NAC domain-containing protein 19
3swp_A	2e-57	2	147	22	168	NAC domain-containing protein 19
3swp_B	2e-57	2	147	22	168	NAC domain-containing protein 19
3swp_C	2e-57	2	147	22	168	NAC domain-containing protein 19
3swp_D	2e-57	2	147	22	168	NAC domain-containing protein 19
4dul_A	2e-57	2	147	19	165	NAC domain-containing protein 19
4dul_B	2e-57	2	147	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678453843

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087598.1	1e-107	NAC domain-containing protein 35
Refseq	XP_022897039.1	1e-107	NAC domain-containing protein 35-like
Swissprot	Q9ZVP8	1e-96	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A2G9GEF3	1e-109	A0A2G9GEF3_9LAMI; Uncharacterized protein
STRING	XP_004134262.1	1e-100	(Cucumis sativus)
STRING	GLYMA17G00650.2	3e-99	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3888	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	4e-99	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]