PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678453567
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family B3
Protein Properties Length: 249aa    MW: 28233.1 Da    PI: 10.0512
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678453567genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.87.8e-3221124199
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsefelvvk 95 
                f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l++ed++g+ W ++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g s+ +l++ 
  678453567  21 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldSSANEKGLLLSFEDRNGKPWHFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQRGvGVSRDRLFID 120
                89***************************966667889*************************************************7735599999999 PP

                EE-S CS
         B3  96 vfrk 99 
                ++r+
  678453567 121 WRRR 124
                9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-4313130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-3116129IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-2619108No hitNo description
SMARTSM010196.1E-2021125IPR003340B3 DNA binding domain
PROSITE profilePS5086314.90321125IPR003340B3 DNA binding domain
PfamPF023623.0E-2921124IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MNFLEAGGGT AVDDKSKEHM FDKVVTPSDV GKLNRLVIPK QYAEKYFPLD SSANEKGLLL  60
SFEDRNGKPW HFRYSYWNSS QSYVMTKGWS RFVKEKKLDA GDVVSFQRGV GVSRDRLFID  120
WRRRLEIQPP LPLSHHFSFL HRSHSHIHPW SPLLLEPSSR SQFKHMYHTP SLLLDGYSSV  180
IANIRQHPAA PRTTEPALDP GTAANGKASV KRLRLFGVTM DCTKSEDRRA APDEKGKSCS  240
TSMSLELGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-61171274116B3 domain-containing transcription factor NGA1
5os9_B3e-61171274116B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678453567
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021900439.17e-78B3 domain-containing protein Os03g0120900-like
SwissprotQ8LMR91e-74Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A2Z7CL917e-80A0A2Z7CL91_9LAMI; Uncharacterized protein
STRINGevm.model.supercontig_37.1083e-77(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.14e-65B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]