PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678453508 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 766aa MW: 86028.4 Da PI: 4.7632 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 363 | 4.4e-111 | 392 | 763 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL++cA+av+++d ++a + L+r+ +++sp+g ++qRla++f+ +L+arl +++++l+++l+ ++ + e+l+a+++f ++P+ k+ + aN+ 678453508 392 LRTLLITCAQAVAADDRRAAYEQLKRIDQHSSPTGGAFQRLAHVFASGLRARLGGTGNQLCASLTHRKMT---AFEKLKAYQVFLCACPFKKLPIFFANK 488 6789*********************************************************999999988...9************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 I a+++++++Hi+Df+i +G+QWp L+q+L++Rp+gpp+lRiTg++ p++g +e++eetg+rLak++e++gvpfe+++++++++e+++le+L++ + 678453508 489 LIGLAASEAHTLHIVDFGILYGFQWPMLIQELSERPGGPPKLRITGIELPQPGfrPSERVEETGRRLAKYCERFGVPFEYQPIATQNWENIKLEDLKIVR 588 ****************************************************9******************************999************** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +E++aVn+ ++l llde+v ++s+rd++L+l+++++P++ v + + +++ Fl+rf eal +ysalfd+++a++pr++ er+ E+ ++gre+ nv+ 678453508 589 DEVVAVNCLFRLGLLLDETVVVDSPRDKLLRLIRKMKPDIYVNAVTSGSFSAPFFLTRFKEALFHYSALFDMFDATIPRDNTERVDFEQDFFGREVINVI 688 **************************************************************************************************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 acegaer+er et+++W++r +aGFkp p++e+++k+ ++ + + + + e+ +++++gWk+r + + S+W 678453508 689 ACEGAERTERPETYKQWHARHVRAGFKPFPVNEEIMKKLRSKSASGYHKDFLFGEDGNWMLQGWKGRIICASSCW 763 *****************************************999988788************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.056 | 366 | 744 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-108 | 392 | 763 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 766 aa Download sequence Send to blast |
MIEQFSSLRV SGLQVASMDP RLSEIFDASN GYKFDGDDFF TSCGQSEYPA NDINHDMDLK 60 FLDDLSLRTS PDLHIFAPSS SVSYETESPD DQDSDEVLKF LNMILVEENL EERPSMFHDP 120 LALQATERSL YEVIGQEYPP SHYSPDIYLD QTSDSPESII VSSSDYVSSS NGGSNSVDAQ 180 WTLDPGEYNS PLEQPYQQGT SNSFVQENSR SLSAPTNPLQ AKSNPDNLNS FDSTDFIKNF 240 FSSSESILQF KKGMEKASKF LPANNQLIID LEQSLPKKSE DMPVPAIEVE SSDINEPANA 300 IRRRKHNFPE DENAENLERN SKQSAIHVEE VELSEFFDRI LLCKDSQGSE FCGQAPKLPA 360 SERSAGQGVL ENGSSGKSQT KNSDGEGDSA DLRTLLITCA QAVAADDRRA AYEQLKRIDQ 420 HSSPTGGAFQ RLAHVFASGL RARLGGTGNQ LCASLTHRKM TAFEKLKAYQ VFLCACPFKK 480 LPIFFANKLI GLAASEAHTL HIVDFGILYG FQWPMLIQEL SERPGGPPKL RITGIELPQP 540 GFRPSERVEE TGRRLAKYCE RFGVPFEYQP IATQNWENIK LEDLKIVRDE VVAVNCLFRL 600 GLLLDETVVV DSPRDKLLRL IRKMKPDIYV NAVTSGSFSA PFFLTRFKEA LFHYSALFDM 660 FDATIPRDNT ERVDFEQDFF GREVINVIAC EGAERTERPE TYKQWHARHV RAGFKPFPVN 720 EEIMKKLRSK SASGYHKDFL FGEDGNWMLQ GWKGRIICAS SCWAPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-46 | 399 | 765 | 25 | 379 | Protein SCARECROW |
5b3h_D | 1e-46 | 399 | 765 | 25 | 379 | Protein SCARECROW |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678453508 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089502.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020552354.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020552355.1 | 0.0 | scarecrow-like protein 14 | ||||
TrEMBL | A0A2G9I6D9 | 0.0 | A0A2G9I6D9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D02079.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |