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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678453212 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB_related | ||||||||
Protein Properties | Length: 209aa MW: 23347.7 Da PI: 5.5857 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.5 | 1.5e-08 | 12 | 34 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W++Ia++++ gRt++++k++w++ 678453212 12 RWAAIAARLP-GRTDNEIKNYWNT 34 5*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.712 | 1 | 40 | IPR017930 | Myb domain |
CDD | cd00167 | 4.52E-7 | 11 | 34 | No hit | No description |
SuperFamily | SSF46689 | 2.37E-7 | 11 | 45 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.4E-12 | 12 | 47 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.8E-7 | 12 | 34 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MMRPEARALI IRWAAIAARL PGRTDNEIKN YWNTSIKKKL MKTGIDPVTH APRLDYLLGF 60 INKSSLVHLL DPLALQLKLA MSLLTPATEI ATPFLWQKLL EKELELVAPY AKPQTTLPEA 120 HACLNNHPSS FQGFSFINNT FQDNNFTEPD VYGSMLPVNS SICNDGFRSM RFDDSSAMHP 180 GGAAEEGETP WGIEIPEGLN LDELMHANQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678453212 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-15 | MYB-like 102 |