PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678452424
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 307aa    MW: 32110.3 Da    PI: 5.6978
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678452424genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.9e-09156200554
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                h+++Er RR+ri +++  L+el+P+ +      K + a++L + ++Y+k L
  678452424 156 HSIAERLRRERIAEKIRALQELVPNvN------KTDRAAMLDEIMDYVKFL 200
                99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-15149210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.27E-11149205No hitNo description
PROSITE profilePS5088815.872151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-14153210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6156200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MANNHSEAAS DDFLESILGY PSYGAPGDTN LGGNDAAPAA MMLQLGSSDG SPHLGVMGAA  60
GLGVGIGGAY GVAPGAGAGG FPLGLSLDQG KAGFGDASGS GNRFLRDDLV DSRGSASSVK  120
PSFHAPPMAN TVPAAPHPPQ MRPRVRARRG QATDPHSIAE RLRRERIAEK IRALQELVPN  180
VNKTDRAAML DEIMDYVKFL RLQVKVLSMS RLGGAGAVAP LVMDIPISSL EDEGNDGARA  240
QPAWEKWSND GTEREVAKLM EENTGAAMQF LQSKGLCIMP ISLASAIYRT QPPEASSITK  300
PETNPLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678452424
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831677.11e-155PREDICTED: transcription factor UNE12
SwissprotO227681e-107UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A022S2E71e-153A0A022S2E7_ERYGU; Uncharacterized protein
STRINGMigut.D00370.1.p1e-154(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-98bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]