PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678451814
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 372aa    MW: 41155.4 Da    PI: 9.0381
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678451814genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.7e-07196218123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C++Cgk F+r  nL+ H+r H
  678451814 196 HYCQICGKGFKRDANLRMHMRAH 218
                68*******************99 PP
2zf-C2H210.80.0016323338621
                TTEEESSHHHHHHHHH CS
    zf-C2H2   6 CgksFsrksnLkrHir 21 
                Cg++Fsrk+ L+ H+ 
  678451814 323 CGTTFSRKDKLMGHLA 338
                **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.8E-6194221No hitNo description
Gene3DG3DSA:3.30.160.601.3E-6196222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.632196223IPR007087Zinc finger, C2H2
SMARTSM003550.0028196218IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280198218IPR007087Zinc finger, C2H2
SMARTSM0035578253286IPR015880Zinc finger, C2H2-like
SMARTSM0035522291313IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MISRATSSCY SLPIHGGGDG GGGGGIHEVQ DLSETNSSSF LFNLSVLKDK VHQIQSFASI  60
WMSPESPQTA VAIPTMATLI QEIIVTAYSM KFSCQQMAIG SPAAFDLNNQ RSKMVAEIVN  120
AGSRGGGARG FLPDQVDDQW SRNHHDLYNN SNEDLGRRIE VGYRRETTEK REIIDGSNNF  180
DIVELDAADL LAKYTHYCQI CGKGFKRDAN LRMHMRAHGD EYKSSAALSN PKKNNPNYGG  240
GESTSPSKPP RKYSCPQEGC RWNKNHPKFQ PLKSMICVKN HFKRSHCPKM YVCKRCNRKQ  300
FSVLSDLRTH EKHCGDLKWQ CSCGTTFSRK DKLMGHLALF VGHSPAINTR TAAGTQNSAQ  360
LGQNSSLGFE PG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678451814
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089967.11e-145zinc finger protein STOP1 homolog
SwissprotQ0WT241e-104STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2G9G3S91e-144A0A2G9G3S9_9LAMI; Uncharacterized protein
STRINGMigut.N02542.1.p1e-137(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-100C2H2 family protein