PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678451334 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | AP2 | ||||||||
Protein Properties | Length: 437aa MW: 48066.5 Da PI: 8.7094 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.5e-17 | 128 | 177 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f t+ Aa+a+++a++k++g 678451334 128 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFHTPHTAARAYDRAALKFRG 177 78*******************......55************************998 PP | |||||||
2 | AP2 | 42.2 | 2e-13 | 220 | 270 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV+ +k g+W+A+ + rk+++lg f+t+ eAa+a+++a ++ +g 678451334 220 SKYKGVTLHK-CGKWEARMGQFL---GRKYVYLGLFDTEIEAARAYDRAVLRCNG 270 89********.7******55532...26**********99*********998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.60E-21 | 128 | 184 | No hit | No description |
SuperFamily | SSF54171 | 5.75E-15 | 128 | 185 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-8 | 128 | 177 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.3E-29 | 129 | 191 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.963 | 129 | 185 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-16 | 129 | 184 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-16 | 220 | 279 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.1E-9 | 220 | 269 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.49E-21 | 220 | 278 | No hit | No description |
SMART | SM00380 | 1.2E-28 | 221 | 284 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.921 | 221 | 278 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-15 | 221 | 278 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MWNLNDSLVG REGSRDDQGK GVGDHSGSDS HSSTAVVLDP SEEEDVDRRW GTNRNTAGKM 60 IGFPYPAPLV TRQFFPVGGG GEEVIGAPRS FLRANWMGAT VCQVVGGEGM GAANPHKKNR 120 RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFHT PHTAARAYDR AALKFRGLDA 180 DINFCIEDYA EDLKHMAKLT KEELVHALRR QGSAFPRGSS KYKGVTLHKC GKWEARMGQF 240 LGRKYVYLGL FDTEIEAARA YDRAVLRCNG KEAATNFDPR IYDEETMTAE SSNRVADYNL 300 DLSLGNAVTK PGTADSGHGS DGRKRSLDVG SVATASPGGG DGCQWKEGYG EMEALQLLSQ 360 SNLKSPDEQL RLVPMSSSPS TLQRYSAHHY QQHRTVGETP LSIAINGQLK NSNQTSVFAA 420 SSGFSLVKDY PPQKDWL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678451334 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010652782.1 | 1e-117 | PREDICTED: transcription factor APETALA2 isoform X1 | ||||
Swissprot | P47927 | 4e-99 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A2Z7BJB7 | 1e-119 | A0A2Z7BJB7_9LAMI; Uncharacterized protein | ||||
STRING | VIT_07s0031g00220.t01 | 1e-116 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2019 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-101 | AP2 family protein |