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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678449939 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | G2-like | ||||||||
Protein Properties | Length: 406aa MW: 45596.9 Da PI: 7.1326 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.9 | 2.3e-33 | 59 | 113 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rF+eav+qLGG+ekAtPk++l+lm+++gLtl+h+kSHLQkYRl 678449939 59 KPRLKWTPDLHQRFIEAVNQLGGAEKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 113 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.983 | 56 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-31 | 57 | 115 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-16 | 58 | 115 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.6E-24 | 59 | 114 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-10 | 61 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.6E-21 | 153 | 197 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MNGTILSTPI DLFNSSSKNT AYREEMSMFH HHQQGRRGYH SSEKPGSRDS GLVLSTDAKP 60 RLKWTPDLHQ RFIEAVNQLG GAEKATPKSV LKLMGIQGLT LYHLKSHLQK YRLSKSHQTN 120 SVGAKPAWRQ AEVRGTQTGI PSAPTQQAKN LHLGDAIQMQ IEVQQQLHEQ LEIQRHLQLR 180 IEAQGKYLHS VLEKAQDTLR RQNMGAIEVE AAKAQLSELV SSVSSHSRNS MKELQDFCLQ 240 QNKTTALLKD SSAESCLTMR DHSIWDQALL PHTPIALKPS CFGDKTEQKA DNRTCQRSTE 300 LRWHEYGDES NEYLSSANLN REIDFFNENN LQNMSMSSGL SGGKHASRRS IIEEVSKGSE 360 EEAETQNTLS EMKLTLFSKS LDLNAEGESE ADFTSRSLDL NSYSCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-21 | 58 | 115 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-21 | 58 | 115 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-21 | 59 | 115 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-21 | 59 | 115 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-21 | 59 | 115 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-21 | 59 | 115 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-21 | 58 | 115 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-21 | 58 | 115 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-21 | 58 | 115 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-21 | 58 | 115 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-21 | 58 | 115 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-21 | 58 | 115 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678449939 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077862.1 | 1e-114 | myb-related protein 2 isoform X1 | ||||
TrEMBL | A0A2Z7B2B1 | 1e-110 | A0A2Z7B2B1_9LAMI; Transcription factor | ||||
STRING | XP_009758035.1 | 1e-106 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2946 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 7e-80 | G2-like family protein |