PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678449798 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 745aa MW: 84309.3 Da PI: 5.521 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 325.2 | 1.3e-99 | 371 | 742 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL++cA+ v++gd++ a++ L++++++ +g + + + f +AL+arl ++++ely++ ++ + se l+++k++ ++P+ k+ l aN+ 678449798 371 LRSLLISCAQSVAAGDHRTAEEQLKQIEQHLPTNGAAHNGVGRLFCRALRARLGGTGNELYASQIQRKLT---ASELLKIYKVYLSTCPFKKLPVLFANE 467 689****************************************************999999776666665...99************************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +I a+++++++Hi+Df+i +G++Wp+L+q+L++Rp+gpp+lRiTg++ p+ g +e++eetg+ L+kf+e++gv++e+++++++++ed++le+L++ + 678449798 468 MIISAASEASTLHIVDFGILYGFHWPTLIQQLSQRPGGPPKLRITGIELPQRGfrPAERVEETGRHLKKFCERFGVSLEYHPIASQHWEDIKLEDLKIVK 567 ***************************************************99******************************999************** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 gE+l n+ ++l r+ldesv+ +s+rd++L+++++++P v+v + + ++ns+ Fl+rf eal ++++lfd+l + lpr + + + +e + ++ nvv 678449798 568 GEVLCANCLFRLGRFLDESVAPDSPRDKLLRMIRKMKPSVFVNTVTNGSYNSPFFLTRFREALFHFTMLFDMLGTILPRGNPDLNEFIQEHYALDVINVV 667 *********************************************************************************7777766666999****** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 acegaer+er et+++W++r +aGFkp pl+e+++k+ ++ + ++ + +++ +++++gWk+r L + S+W 678449798 668 ACEGAERVERPETYKQWKSRHLAAGFKPHPLQEETMKKLRSRSKATSHIDFLFDKDGNWMLQGWKGRILSASSCW 742 ***********************************************777************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.048 | 345 | 723 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.6E-97 | 371 | 742 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 745 aa Download sequence Send to blast |
MDPQLRQFSD AANEFEFVYG DFFTSQTQSQ YLSTDVHHHM DFNVSDIPFL PLSPDPENCS 60 SPATASCETE SADDQDPGEM LKYLNMYLVE ENSDDMINTF HGPLVLQATE KSLYELIGQE 120 YPPLHMNIEA YPDQSTDTPE TTIDSSSGCT SGFCDDVTSF VDFQWVVDPS ENNSTLKQDH 180 RNGVSPNLFM QKKLQSLSIP VDDSEGHTDR TMLLHDMFNN EESILQFKRG MEAASKFLPT 240 DNKLIIDLDK YMLPEKSEDV MKVGVVKIEK NNIDGFELPL RGKRHHYPRD GDSENLERSI 300 KQSAVSVEDV DLSEYLERTL CCDDDEVLEL STKEAKLPGS KKGLPQGALA SHSSRRSRAK 360 KSDNNGDVVD LRSLLISCAQ SVAAGDHRTA EEQLKQIEQH LPTNGAAHNG VGRLFCRALR 420 ARLGGTGNEL YASQIQRKLT ASELLKIYKV YLSTCPFKKL PVLFANEMII SAASEASTLH 480 IVDFGILYGF HWPTLIQQLS QRPGGPPKLR ITGIELPQRG FRPAERVEET GRHLKKFCER 540 FGVSLEYHPI ASQHWEDIKL EDLKIVKGEV LCANCLFRLG RFLDESVAPD SPRDKLLRMI 600 RKMKPSVFVN TVTNGSYNSP FFLTRFREAL FHFTMLFDML GTILPRGNPD LNEFIQEHYA 660 LDVINVVACE GAERVERPET YKQWKSRHLA AGFKPHPLQE ETMKKLRSRS KATSHIDFLF 720 DKDGNWMLQG WKGRILSASS CWVSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-34 | 375 | 698 | 8 | 328 | GRAS family transcription factor containing protein, expressed |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678449798 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089502.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020552354.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020552355.1 | 0.0 | scarecrow-like protein 14 | ||||
TrEMBL | A0A2G9I6D9 | 0.0 | A0A2G9I6D9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D02079.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-169 | SCARECROW-like 14 |