PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678449286
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family G2-like
Protein Properties Length: 408aa    MW: 44506.9 Da    PI: 7.0666
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678449286genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.6e-32202257156
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                k+r++W+p+LH+rFv+a++ LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  678449286 202 KARRCWSPDLHRRFVKALQILGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 257
                68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.485199259IPR017930Myb domain
SuperFamilySSF466894.48E-17199260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28199260IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-26202257IPR006447Myb domain, plants
PfamPF002499.7E-7204255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MNPPWDLSFE CKPHLKLDEA QKLEEFLSRL EEERHKIEAF KRELPLCMQL LADGKIATLD  60
YLVAGVISCA MEASRLQLRT RRSNPVLEEF IPIKKGGDGS EMEVGSTATD RSDWMTSAQL  120
WNRENEKAHS VPDEAEIKFS LNGGKPRINS GAFHPFPSRD KASSSEEGFP ELALASNHGG  180
EDSRSSPETK REHGGGSTTQ RKARRCWSPD LHRRFVKALQ ILGGPQVATP KQIRELMKVD  240
GLTNDEVKSH LQKYRLHTRR PSPAPQAAVA APPQVVVLGG IWVPPEYAAA VQGGGPGALY  300
GAPPHPFCPQ SAAVRQEMFS AIAPSPPSAA HHHQGDAHHR LYTPLTQRNF SPESGVQGGA  360
IGNSSESIED GKSESGSWKA DSGMGNPGER RRPEGGEECN ASIVSLNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-13202255154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-13202255154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-13202255154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-13202255154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678449286
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022027337.11e-110myb family transcription factor EFM-like
SwissprotQ9ZQ858e-78EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A2G9H0V81e-127A0A2G9H0V8_9LAMI; Uncharacterized protein
STRINGXP_010254263.11e-109(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87942229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-63G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]