PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678449274

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

LSD

Protein Properties

Length: 390aa MW: 42025.8 Da PI: 4.1542

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678449274	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37.7	3.4e-12	338	362	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC + L+YP GAp+V+C++C++V 678449274 338 CGGCSVFLMYPHGAPAVHCTSCQFV 362 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	9.9E-7	297	325	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.5E-8	335	364	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-9	338	362	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MGNVEEETTT AREQEEEEDD DDGPPPGFVC IITPLPPPLP KEAEVHDSLD EEEDEDGPPP 60 GFDSIVPKPA QASPDSSSSS QKENSGGDGD EDDADGPPPG WEIRNPLNES TKSSPNTAGI 120 SDTKTDSDDD LDEGPPPGWE AVLPTRVEAN SCMPLQESSS SLPSGLELES KLTIAADTDE 180 KVPPLDSELL PVSRNSAENS LLPEQNSSSE MHNGVFSGHR HPTNQPSESE LLPLSRSSVT 240 STWLPEVPSL EVHDDLRKKT DDENDSDSVP TDNHTSAQQQ LPPSPGPLSS PAPEKAQLVC 300 GTCRNLCLYP AGTKWVQCPS CKELNFALEE HEVGQVHCGG CSVFLMYPHG APAVHCTSCQ 360 FVTRIGEHNR RPPLAAQLMK LGHHRSKRPR

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MGNVEEETTT AREQEEEEDD DDGPPPGFVC IITPLPPPLP KEAEVHDSLD EEEDEDGPPP  60
GFDSIVPKPA QASPDSSSSS QKENSGGDGD EDDADGPPPG WEIRNPLNES TKSSPNTAGI  120
SDTKTDSDDD LDEGPPPGWE AVLPTRVEAN SCMPLQESSS SLPSGLELES KLTIAADTDE  180
KVPPLDSELL PVSRNSAENS LLPEQNSSSE MHNGVFSGHR HPTNQPSESE LLPLSRSSVT  240
STWLPEVPSL EVHDDLRKKT DDENDSDSVP TDNHTSAQQQ LPPSPGPLSS PAPEKAQLVC  300
GTCRNLCLYP AGTKWVQCPS CKELNFALEE HEVGQVHCGG CSVFLMYPHG APAVHCTSCQ  360
FVTRIGEHNR RPPLAAQLMK LGHHRSKRPR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678449274

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	5e-29	lsd one like 2