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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678448854 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB_related | ||||||||
Protein Properties | Length: 144aa MW: 15689.6 Da PI: 4.3295 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.9 | 1.5e-10 | 5 | 33 | 17 | 46 |
HHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ ++W+ Ia++++ gRt++++k++w++ 678448854 5 MKYDANRWSQIAQHFP-GRTDNEIKNHWHS 33 5677788*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.061 | 1 | 39 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.2E-10 | 2 | 39 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-13 | 2 | 36 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.10E-9 | 3 | 32 | No hit | No description |
Pfam | PF00249 | 3.1E-8 | 4 | 34 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MSLLMKYDAN RWSQIAQHFP GRTDNEIKNH WHSCLKKLAD NQFSNTESPV GAPQISPPPL 60 LFAEWLSSDL FLPPCAGIPP DLFSGNGIRE PGCHGDLGSA DHGGGFGVAE EMPSFGYTME 120 EENMGFGCFP GASCNCIDCE SIFF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678448854 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 9e-11 | myb domain protein 21 |