PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678448673
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 499aa    MW: 55046.6 Da    PI: 6.4171
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678448673genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30123180260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                +Dg+ WrKYGqK+vkgse+prsYY+Ct  +Cpv+kkvers+ d++++ei Y+g Hnh+k
  678448673 123 EDGFYWRKYGQKHVKGSEHPRSYYKCTNMNCPVRKKVERSR-DGQITEIEYKGFHNHPK 180
                7****************************************.***************85 PP
2WRKY104.84.6e-33302359158
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k++er+a+d k v++tYeg+Hnh
  678448673 302 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTPGCLVRKHIERAANDIKSVVTTYEGKHNH 359
                59******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.524117181IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-27117181IPR003657WRKY domain
SuperFamilySSF1182906.15E-25120181IPR003657WRKY domain
SMARTSM007749.2E-34122180IPR003657WRKY domain
PfamPF031065.9E-24123179IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-34287361IPR003657WRKY domain
SuperFamilySSF1182901.18E-27295362IPR003657WRKY domain
PROSITE profilePS5081136.69297362IPR003657WRKY domain
SMARTSM007744.7E-37302361IPR003657WRKY domain
PfamPF031062.6E-24303359IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MAGNGDAQGM NDQRDEPGAH IAQQRGFDSC KMTNADAALG QQGSSFSSHC LTIPCGISPS  60
ALLDSPIMFP KEQEDTEDSQ ETGTKDGYTV HEKSAAASSI DDTQVTNHKT ASYLARGAAK  120
YSEDGFYWRK YGQKHVKGSE HPRSYYKCTN MNCPVRKKVE RSRDGQITEI EYKGFHNHPK  180
PQISNSSDLI TDTNGLCFTT PVPKPDALGQ DHGTTNSDPF LGDSSSMSVD TREGFLCPPN  240
HQSDNQNEAS QESVSLGHDN EDSGEYESKK RKTGGSPDEA ILPTSTREPR VVVQIESEID  300
ILDDGYRWRK YGQKVVKGNP NPRSYYKCTT PGCLVRKHIE RAANDIKSVV TTYEGKHNHL  360
LPSHKNGTTS DVTTSPANPS PCPPRLDDSK ARRRVPDMTL YTQMIDYSEL MRPNFLSSSD  420
MNINLAASVY SPLTFPPLNH TNYGPAFVGM NGIFPALPGN PMNHSSSSSR QNYGMQAQSN  480
GFLAKPKDEQ MDPDYQKHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36123363878Probable WRKY transcription factor 4
2lex_A2e-36123363878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678448673
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077170.11e-101probable WRKY transcription factor 20
SwissprotQ6VWJ62e-72WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A2G9H5V35e-97A0A2G9H5V3_9LAMI; Uncharacterized protein
STRINGXP_002514852.11e-86(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.19e-75WRKY DNA-binding protein 33