PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678447995
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 1476aa    MW: 165669 Da    PI: 6.4611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678447995genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016836859123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                y+C +C  sF++k  L++H +  H
  678447995 836 YVCAICLDSFTNKKVLESHVQQrH 859
                9******************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.30.1601.4E-4149208No hitNo description
PROSITE profilePS501578.663802830IPR007087Zinc finger, C2H2
SMARTSM003551.8802825IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280804825IPR007087Zinc finger, C2H2
SMARTSM003550.059836859IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.683836859IPR007087Zinc finger, C2H2
PROSITE patternPS000280838860IPR007087Zinc finger, C2H2
SMARTSM0035521870893IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280872893IPR007087Zinc finger, C2H2
SMARTSM003551.3936959IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.536936964IPR007087Zinc finger, C2H2
PROSITE patternPS000280938959IPR007087Zinc finger, C2H2
SuperFamilySSF821997.72E-7311761466No hitNo description
Gene3DG3DSA:2.170.270.103.9E-7911781475No hitNo description
SMARTSM004682.3E-611841305IPR007728Pre-SET domain
PfamPF050332.6E-1111871313IPR007728Pre-SET domain
PROSITE profilePS508679.312421318IPR007728Pre-SET domain
SMARTSM003171.1E-3913211459IPR001214SET domain
PROSITE profilePS5028017.06113211453IPR001214SET domain
PfamPF008562.7E-2113321451IPR001214SET domain
PROSITE profilePS508689.69114601476IPR003616Post-SET domain
SMARTSM005080.003414601476IPR003616Post-SET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006342Biological Processchromatin silencing
GO:1900109Biological Processregulation of histone H3-K9 dimethylation
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1476 aa     Download sequence    Send to blast
MEVLSCTGVL NSGESESTDK VSEAALELGK EQVRTDTNSD GISDPLGKHH EVKEDGNHIV  60
LHNFLPSEGC SNGETFYDLE LEGQNISCGS HDSDDDLEKG NDDHFPGPDF AMDTMDTAED  120
TVESEVAVNS PTSSTSHFQT NTIETDKPQA VWVKWRGKWQ PGIQCARADW PLSTLRAKPT  180
HDRKQYLVIF FPQTRNYSWA DVLLIRPIIE SPQPMTYISH VVAAKMARDL SIAHRFIMQK  240
LAVGMLNILD QLSREALVET ARDVKILKDF ARDASRCKEY TELGGMLLRL LTMVLPRCLD  300
SGWLQSSVQS WKQQCENANT AECIELLKEE LALSILWNEV TVVSNEAAKV DPGSEWKSWK  360
QEVMKWFSFS HHVTTAVGSE KAAFESLSTI GNQMARKRPK LEVRRADTQA HGSVEAEMSI  420
LKEHDIGNNA LFESGKPTKE TLPGSSAVAG CISDVPDQWN DSVDNVSKGK VTDAELTPES  480
FVNSKFVELG SHNRQCAAFI ESKGRQCVRF ANEGEVYCCV HLASRSRENS AKLVTVHHHD  540
LLLCEGTTVL GTKCKHRALF GSSFCKKHGP QDGKSVMPSV HGIKRKTEDA NFSSDSGIIT  600
KHLVTGEHGS PPSGDPLSGN KRSTVQESST GQYSEQHGGS IDEKPFCIGS LPQECAESCR  660
EAPIRHSLYC DKHIPSWLKR ARNGKSRIIS KEVFLDLLGK CHSRDQKLQL HQACELFYRL  720
FKSILSLRNP VPKEVQFQWA IAEASKDKKT GHFLVKLVSQ EKERLKMLWG FGDDQNSLPP  780
SAIEEFPVLL HTSEDNELQD DIKCKICSET FPDDQVLGKH WMDNHKKEAQ WLFRGYVCAI  840
CLDSFTNKKV LESHVQQRHH VDFVEHCMLL QCIPCGSHFG HSEELWLHVP SAHPSDLRSP  900
NDAKQQGGSS GKKAEPANPS TVEHMKSETQ SDNRRFVCRF CGLKFDLLPD LGRHHQAAHM  960
GQGISGPRVV KKSTQFYAQK LKSSSLNHLR FQKALNSASY RIRNRSVQNL NKRIQESTFG  1020
PKDVSIPSAS PEASALGRLA DFQCSDIAKV LMSEIKKTKP RPSNSELLEI ASSACCKVSL  1080
QRSLEAKYDT LPEGVYLRAA RFCSEHNVSV SWHQESFVCP KGCEAATRST TLSTVMESSG  1140
NRHKSRSCTP SFPMDSDCIM DECHCVIDSQ HFSIDLSEKN IILCDDISFG QESVPVACVV  1200
DENLLNTDGQ MMDYSFPWES FTYATKSILH HSLFVESESL QMGCTCKPAA CSPKTCDHVY  1260
LLENDYDDAK DIYGYSMQGR FPYDESGRII LEEGCLVYEC NQRCCCSRDC QNRVLQNGLQ  1320
VKLEIFKTER KGWAVRAREA IHRGTFVCEY IGEVIDEEEA NERRKRYGEE GCRYFYEINP  1380
RINDITRLTD GQARYIIDAM NYGNVSRYIN HSCSPNLMNH RVLVESMETQ LTHVGFYANR  1440
DIAVGEELTY DFHYEILPGE GSPCLCGSSN CRGRLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k5k_A3e-421182147211266Histone-lysine N-methyltransferase, H3 lysine-9 specific 3
3k5k_B3e-421182147211266Histone-lysine N-methyltransferase, H3 lysine-9 specific 3
3rjw_A3e-421182147211266Histone-lysine N-methyltransferase EHMT2
3rjw_B3e-421182147211266Histone-lysine N-methyltransferase EHMT2
4nvq_A3e-421182147213268Histone-lysine N-methyltransferase EHMT2
4nvq_B3e-421182147213268Histone-lysine N-methyltransferase EHMT2
5ttf_A3e-421182147211266Histone-lysine N-methyltransferase EHMT2
5ttf_B3e-421182147211266Histone-lysine N-methyltransferase EHMT2
5ttf_C3e-421182147211266Histone-lysine N-methyltransferase EHMT2
5ttf_D3e-421182147211266Histone-lysine N-methyltransferase EHMT2
5v9i_A3e-421182147211266Histone-lysine N-methyltransferase EHMT2
5v9i_B3e-421182147211266Histone-lysine N-methyltransferase EHMT2
5v9i_C3e-421182147211266Histone-lysine N-methyltransferase EHMT2
5v9i_D3e-421182147211266Histone-lysine N-methyltransferase EHMT2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678447995
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099261.10.0histone-lysine N-methyltransferase SUVR5
TrEMBLA0A4D9ANX20.0A0A4D9ANX2_SALSN; Histone-lysine N-methyltransferase SUV39H
STRINGMigut.H00513.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA932334