PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678447657 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | NF-YA | ||||||||
Protein Properties | Length: 236aa MW: 25879.7 Da PI: 9.1518 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 106.8 | 1.8e-33 | 111 | 167 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl k+rkpylheSRh+hAl+R RgsgGrF 678447657 111 DGPIYVNAKQYHGILRRRQTRAKLEAQNKL-VKTRKPYLHESRHQHALNRVRGSGGRF 167 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 7.2E-37 | 109 | 170 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.201 | 110 | 170 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.5E-24 | 113 | 135 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.4E-28 | 113 | 167 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 115 | 135 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.5E-24 | 144 | 167 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MEKTTSQDQC GSSDSGTNSS CYAVSTRFFI ELGCCGKHGQ DIRGAFFLGN PEMFTNASSA 60 EINQPMFQHS YSDPHFSGVF AAAYGHHSVI QPHMMGAAFG RVPLPPDLPE DGPIYVNAKQ 120 YHGILRRRQT RAKLEAQNKL VKTRKPYLHE SRHQHALNRV RGSGGRFLST KKQQQQSESA 180 DTLASTSSSP TPHDFLFDHK ASLKEPNNYC EGGGAQGGSS GPIYNGNRHY ASSTVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 4e-22 | 111 | 173 | 2 | 64 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678447657 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020553567.1 | 6e-79 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
Refseq | XP_020553568.1 | 6e-79 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
Refseq | XP_020553569.1 | 6e-79 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
Refseq | XP_020553572.1 | 3e-79 | nuclear transcription factor Y subunit A-3 isoform X5 | ||||
Refseq | XP_020553573.1 | 3e-79 | nuclear transcription factor Y subunit A-3 isoform X5 | ||||
Swissprot | Q93ZH2 | 1e-41 | NFYA3_ARATH; Nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | A0A2G9HRD3 | 6e-77 | A0A2G9HRD3_9LAMI; CCAAT-binding factor, subunit B (HAP2) | ||||
STRING | Migut.J00955.1.p | 8e-76 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5009 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 9e-44 | nuclear factor Y, subunit A3 |