PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678447385
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 542aa    MW: 61412 Da    PI: 5.2204
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678447385genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-10491539247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       rW+  E++ l  +v+++G g+WktI +      + Rt+ ++k++w+++
        678447385 491 RRWSVLEEDTLRTGVEMYGRGNWKTILNAYRdvfEERTEVDLKDKWRNL 539
                      59********************************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.942485542IPR017930Myb domain
SuperFamilySSF466891.09E-13487540IPR009057Homeodomain-like
SMARTSM007171.7E-6489542IPR001005SANT/Myb domain
CDDcd116601.98E-17491541No hitNo description
PfamPF002493.0E-8491539IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-10491541IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MEDYPVDWVM DTDQYVIRNL ILEFILKGSV GLRKCDLDSL LRLFPLSDDN PNLKKLILLK  60
ELEFQIQKNP ALEKLLYYIA QLAEIELERG VETVSDAMKQ VYCVVAVECS LRLLKSWEDA  120
DDGCREAMKR IWGGKTGSKD KVVFRLESEN LWEWNDIIEA AISDVDFRQS VLESLEGIDA  180
IGAVKAFLMG EKKKMGPSCF ELIAREFRQK LQDMLETAGS DEITKNKGVK EKKNVVIADH  240
VVLENVANAD QCTAQVTDEL ANADHVDKER ESIDMINKPG DADHIVEGEI PNFPRLDAHD  300
PVNQPQIKGI RLRDKLVGLR RSARRLVSGT GRGAKLNESD SMEANLPQGG NNIPCASEVK  360
RVQKALKLSS SDLHAVVTDP LPGALRIADE VCGIQSNMKS KDAIEENVVG STVRDDDGLL  420
QATGIVKDIP RPSMMDRNST AHTMQWDDSI DDISDDEIAN PRRRHHLPSP RVVKIPQLKR  480
YEPNKRRRMT RRWSVLEEDT LRTGVEMYGR GNWKTILNAY RDVFEERTEV DLKDKWRNLT  540
RG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678447385
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-12TRF-like 5