PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678446344

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

GeBP

Protein Properties

Length: 376aa MW: 41309.1 Da PI: 5.4621

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678446344	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	120	1.3e-37	83	180	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk.spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 klfqrlw++eDei lLqG++d+++++g+ ++++d++ fy+++k +++f+++k+qlveK+rrLKkK+++ v++ +sgk+ f+++hdq +fe+s+kiWg 678446344 83 KLFQRLWTDEDEIELLQGFLDYTTRRGSsQQYHDTSSFYDQIKTKLQFDFNKNQLVEKLRRLKKKYRNLVTRFSSGKDYIFKSPHDQATFEISSKIWG 180 579**********************966777**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.6E-35	85	180	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MAAAAAEPSS VIFNGLLDDE DDLTDHDEDD SSSSAAAAAA AAAAALDRAP LSISQVTIAV 60 PDLHLQHHVT DSKRPVPGDE SRKLFQRLWT DEDEIELLQG FLDYTTRRGS SQQYHDTSSF 120 YDQIKTKLQF DFNKNQLVEK LRRLKKKYRN LVTRFSSGKD YIFKSPHDQA TFEISSKIWG 180 NAAVNANGSA AFRGAALEDD DDDLNNPNFF AFQRTVPGGV EVNNKSPASR KRNLSGSMKS 240 EEKPPLHNSG YSNINILQTP PAMATPIAAP VLNMGFSGPM SNVIEETVKS CLSPILKELL 300 PSSTGSNAFS SGLCCGHAFG PGSPISLCYP GTVPDKTADE RWRKQQILEL EVFSKRLELV 360 QDQIREQLKE LRSMGN

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MAAAAAEPSS VIFNGLLDDE DDLTDHDEDD SSSSAAAAAA AAAAALDRAP LSISQVTIAV  60
PDLHLQHHVT DSKRPVPGDE SRKLFQRLWT DEDEIELLQG FLDYTTRRGS SQQYHDTSSF  120
YDQIKTKLQF DFNKNQLVEK LRRLKKKYRN LVTRFSSGKD YIFKSPHDQA TFEISSKIWG  180
NAAVNANGSA AFRGAALEDD DDDLNNPNFF AFQRTVPGGV EVNNKSPASR KRNLSGSMKS  240
EEKPPLHNSG YSNINILQTP PAMATPIAAP VLNMGFSGPM SNVIEETVKS CLSPILKELL  300
PSSTGSNAFS SGLCCGHAFG PGSPISLCYP GTVPDKTADE RWRKQQILEL EVFSKRLELV  360
QDQIREQLKE LRSMGN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678446344

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552957.1	1e-140	probable transcription factor At3g04930
Swissprot	F4K5T4	1e-77	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A2G9HBP4	1e-145	A0A2G9HBP4_9LAMI; Uncharacterized protein
STRING	Migut.N01941.1.p	1e-127	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4052	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	6e-68	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]