PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678445974 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 578aa MW: 63435.9 Da PI: 6.7376 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 290.6 | 4.4e-89 | 206 | 578 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +++L+e+A a+s+g+ e ++lL+rl + a + + ++l+ y++ AL+ar+ + ++ +p+ +e s+e++aa++l + v P++ +++++aN 678445974 206 KQALIEAAVAISEGKPESGNELLTRLLQEAKAKNnFSEKKLVEYMVSALKARVES----TVGRFPAG--AEGYSDEQAAATRLVYCVPPCFMLGFMAANL 299 689***********************9997777637******************9....33334443..33469999*********************** PP GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 aIlea+++ +++H++ f+++qG+Q++ L+++La+ + + + sl iT+++ ke+l+ +g+ L+ +A++ gv+++f++ ++++l+ ++L 678445974 300 AILEATSELsfQKIHVLEFELGQGGQYVHLIRTLAANAkhegKAAMSLTITAFAY-GGAGKESLRLVGDDLRALAANNGVSLRFHI-RDFKIDELSRDKL 397 ******99778************************66655544455999999999.3349*************************9.677********** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 +++p+EalaVn++++lh+l+desv++e++rd++L+ vk+lsP vv+vveqe+++n++++++r+ +a +yy+al++sl+a lp+++ +r+ + lg ++ 678445974 398 EINPDEALAVNFAFKLHNLPDESVTVENPRDALLRRVKTLSPAVVTVVEQELNTNTAPLVTRVRDAYDYYAALLESLDAILPPDHPDRTRIVDG-LGLKL 496 ********************************************************************************************99.***** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +n +aceg+er+er+e ++kWr+rl++aGF+p+p+s++a ++ ++ l+ g+++ + g +++ Wk++pL ++SaWr 678445974 497 TNSIACEGRERVERCEVFGKWRARLSMAGFQPLPVSTRAGESLRAKLNAPTrvTSGFSLSLDAGGICFAWKGKPLAFASAWR 578 *******************************************999998666789**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.612 | 179 | 556 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-86 | 206 | 578 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence Send to blast |
MSSGYPADAP DLLYCGGRRP VGAESGGGGC DQFSTQQQQF SLRLPGGQEI PGQIRSGEFM 60 GKRSLMEFQQ NQQAMEFYLR NVRMRANYGY HASPLSRPEL SILRHQTPHN LRVLDTAVEG 120 FGRRVEFGNQ EDSDKSLMNR RLQELERKLL DDEDDGDAAS VVTEREWSEA IRDLISPVQK 180 HLSPSPTSSS SSCTSTSASH PPLCSKQALI EAAVAISEGK PESGNELLTR LLQEAKAKNN 240 FSEKKLVEYM VSALKARVES TVGRFPAGAE GYSDEQAAAT RLVYCVPPCF MLGFMAANLA 300 ILEATSELSF QKIHVLEFEL GQGGQYVHLI RTLAANAKHE GKAAMSLTIT AFAYGGAGKE 360 SLRLVGDDLR ALAANNGVSL RFHIRDFKID ELSRDKLEIN PDEALAVNFA FKLHNLPDES 420 VTVENPRDAL LRRVKTLSPA VVTVVEQELN TNTAPLVTRV RDAYDYYAAL LESLDAILPP 480 DHPDRTRIVD GLGLKLTNSI ACEGRERVER CEVFGKWRAR LSMAGFQPLP VSTRAGESLR 540 AKLNAPTRVT SGFSLSLDAG GICFAWKGKP LAFASAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-33 | 192 | 578 | 10 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678445974 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076123.1 | 0.0 | scarecrow-like protein 8 | ||||
TrEMBL | S8EMR1 | 0.0 | S8EMR1_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.F01094.1.p | 1e-169 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4023 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-104 | SCARECROW-like 8 |