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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678444833 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB_related | ||||||||
Protein Properties | Length: 235aa MW: 25536 Da PI: 9.2368 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.2 | 1.6e-12 | 69 | 113 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ ++ + + lG+g+Wk I++++ R + q+ s+ qky 678444833 69 PWSEEEHRAFLAGLATLGKGNWKGISAKFVPSRNPTQVASHAQKY 113 8**************************9999*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.064 | 62 | 118 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.06E-15 | 63 | 118 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-14 | 65 | 117 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.8E-11 | 66 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-10 | 66 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.15E-10 | 69 | 114 | No hit | No description |
Pfam | PF00249 | 7.7E-10 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSSGECCAPC GGAFMLFGVC IGCGSAAIRK SKSVGDSPSR ECGADAAEYL SDRSRPPSLR 60 SKSRKKGVPW SEEEHRAFLA GLATLGKGNW KGISAKFVPS RNPTQVASHA QKYFNRKEAL 120 EKRQRRTSIF DIPLCIKDHH EHVQGSSSTS QTVSKKVSCY LSTTAGIDQT KAPSPPLLRQ 180 YPHPHPPQPG VLGCKCNESS SILSSCIHKI DDSTVQYCSL ERMFVRPHAL NSSLD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678444833 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076440.1 | 7e-37 | probable transcription factor At5g61620 | ||||
Swissprot | Q7XC57 | 1e-28 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | A0A022PWJ4 | 2e-34 | A0A022PWJ4_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F00531.1.p | 4e-35 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7454 | 12 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61620.1 | 6e-26 | MYB_related family protein |
Publications ? help Back to Top | |||
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