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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678444683 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | bHLH | ||||||||
Protein Properties | Length: 148aa MW: 16373.1 Da PI: 9.1789 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.7 | 2.8e-05 | 37 | 71 | 15 | 54 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +++ +L++l+ + +K + a++L +A eYIk L 678444683 37 KLTERITTLQQLISPY-----GKTDTASVLLEALEYIKFL 71 7789999999999999.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.21E-6 | 20 | 76 | No hit | No description |
PROSITE profile | PS50888 | 11.261 | 22 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-11 | 23 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0058 | 30 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-8 | 31 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MHHKRVPVSL DQSSCLDLMP KRLKTIAPFS SKEKKEKLTE RITTLQQLIS PYGKTDTASV 60 LLEALEYIKF LHEQVKVLSA PYLYSTPMKP QEECAGLAAK GLCLVPVSFT VGVASSNGAD 120 IWAPVKANSR RLFPNEMSIV NQTLIDNA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678444683 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011091560.1 | 5e-69 | transcription factor bHLH113 isoform X1 | ||||
Refseq | XP_011091561.1 | 4e-69 | transcription factor bHLH113 isoform X2 | ||||
Refseq | XP_011091562.1 | 4e-69 | transcription factor bHLH113 isoform X2 | ||||
Swissprot | Q7XJU2 | 8e-47 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A2G9GQ11 | 8e-68 | A0A2G9GQ11_9LAMI; Uncharacterized protein | ||||
TrEMBL | A0A4D9C2D2 | 1e-65 | A0A4D9C2D2_SALSN; Uncharacterized protein | ||||
STRING | Migut.N03067.1.p | 2e-64 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10428 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 3e-49 | bHLH family protein |
Publications ? help Back to Top | |||
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