PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678444257
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 300aa    MW: 33231.5 Da    PI: 7.0937
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678444257genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26086.73.2e-2754156197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                +C++C+vlr++C++dC++++ +     p++q++++ +++k++G++ +++l++a ++ + r+++++sl+yeA+ r+ +P+yG+vg++ ++++ql+q ++++
  678444257  54 SCNGCRVLRKGCSDDCPIRQSLewirsPDAQANATVFLAKFYGRTGLVNLINAGKPPRmRQAIFRSLLYEACGRIVNPIYGSVGLLETGKWQLCQDAVDA 153
                6*****************************************************66666************************************99988 PP

     DUF260  95 all 97 
                +l 
  678444257 154 VLK 156
                765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.46353160IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-2254152IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MWFVCPRHYS HGGWMGHSQD DGLDRVQRRF WEPVEVEAFD FSWEQRDTTS MRLSCNGCRV  60
LRKGCSDDCP IRQSLEWIRS PDAQANATVF LAKFYGRTGL VNLINAGKPP RMRQAIFRSL  120
LYEACGRIVN PIYGSVGLLE TGKWQLCQDA VDAVLKGVPI EKMAASDAPD VKGYDIRHVC  180
KKDKKQFSGA MALNRVRSGT RFKRPGARRQ LESEEDQSPS HGSTLSHQSA AAAAEVVDRE  240
SPCRSSPVTD VDSNSAGENH DDDIELDLSL GLWPVNRCMN PKDSAASGGA CQMELGILPA
Cis-element ? help Back to Top
SourceLink
PlantRegMap678444257
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840975.17e-83PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8864e-73LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A4D9C3B94e-82A0A4D9C3B9_SALSN; Uncharacterized protein
STRINGMigut.L00314.1.p3e-82(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-75LOB domain-containing protein 41