PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678443586
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 1423aa    MW: 158504 Da    PI: 7.9792
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678443586genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001311621188123
                 EEET..TTTEEESSHHHHHHHHHH..T CS
    zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                 y+C+   Cg +F+  s++ rH r+  H
  678443586 1162 YVCKvqGCGLTFRFISDFSRHRRKtgH 1188
                 99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005454.3E-121555IPR003349JmjN domain
PROSITE profilePS5118313.8961657IPR003349JmjN domain
PfamPF023754.3E-141750IPR003349JmjN domain
SMARTSM005581.3E-43295464IPR003347JmjC domain
SuperFamilySSF511972.75E-28296462No hitNo description
PROSITE profilePS5118434.663298464IPR003347JmjC domain
PfamPF023735.9E-35328447IPR003347JmjC domain
SMARTSM003553510791101IPR015880Zinc finger, C2H2-like
SMARTSM003550.7611021126IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.69911021131IPR007087Zinc finger, C2H2
PROSITE patternPS00028011041126IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-811301156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.26111321161IPR007087Zinc finger, C2H2
SMARTSM003550.006111321156IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011341156IPR007087Zinc finger, C2H2
SuperFamilySSF576674.99E-1011421185No hitNo description
Gene3DG3DSA:3.30.160.605.3E-1011571185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.5911621188IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.89111621188IPR007087Zinc finger, C2H2
PROSITE patternPS00028011641188IPR007087Zinc finger, C2H2
PROSITE profilePS5150116.52113351423IPR007853Zinc finger, DNL-type
PfamPF051807.1E-2313421402IPR007853Zinc finger, DNL-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1423 aa     Download sequence    Send to blast
MRNVEVPKWL QELPLAPEFR PTDTEFADPI AYITKIEKEA GSYGICKIIP PVPKPSRKFV  60
LHNLNKSLSK SPELGSDITL ETSSKEEFNG RDNRNRKVNN GYGKAVFTTR SQELGIEKGK  120
RLKGTAGDSL GPKKQVWQSG EVYTLEQFEA KSRIFAKSQL GVVKEVNPLV IEAMFWKAAS  180
EKPIYVEYAN DVPGSAFGEP EGLMQYFDRR RKRRRRKRNS FDRNNLGHAD PESNQIDTLE  240
KICDTKDSSS RNNSDSCTER AAESEASNQP LSEASFSGRK EFESDSEMEG TAGWKLSNSP  300
WNLQVIARSP GSLTRFMPDD IPGVTSPMVY IGMLFSWFAW HVEDHELHSL NFLHVGSPKT  360
WYSVPGDHAY DFEEVIRHNV HGGGTDRHDA LCLLGEKTVV MSPEVILSSG IPCFRLVQNP  420
GDFVVTFPRA YHIGFSHGFN CGEAANFGTP RWLDVAKEAA VRRAAMNYLP MLSHQQLLYL  480
LTMSFISRVP RSLLPGVRSS RFKERLKEER ELLVKKAFIE DILHENNQLR FLLRRNSSYR  540
AVLWDAESLP SSGKGAEVCK SADIVSPVKE SLQNADTLHE LIELKDFMNA VDSDLCNDDL  600
SYDFQVESGA LPCVACGVLG FPFMAVLQPY SVASASSLLP DLVAVPSESS LVSDASHMEK  660
SSMKDKRSMI AGTPRAVDRS MGLLHEDISP KPEILEEWNE SDVFLKPRIF CLEHAIEVEE  720
LLSSKCRVNV LVLCHSDFQK IRAHASAVAE EVAIPFCFHE VPLENASPED MNLIDISIGA  780
DEQDCAENWT SLMNMNLQHL VKVKRSAQHE CTRYLMSVRR LLSGEISVSN TSSVKWLSRK  840
LRTKRQPQCG WQSKLSDGDE TGSLMKVSKR HPSSHDDVQI IQYSRKKHRV CNPASKLGSA  900
DVAETAALSD CKVTRREDVC DSRDLHCHEV KFDDIECKQS SAKEIQDLSG SADCSGADPL  960
VKCVPEQMKE VSDGNMQHTQ AFKEVAISRD ESSAEVQSPS DRPLSGLSNK IAGKKGSKRR  1020
REVDQLDACG FIRGPCEGLR PRGKESRELG AKCEPTEVKK ARGVQDDKNK NSKNRKERHR  1080
CDTEGCTMSF NTRAELLLHK DGRCPVAGCR KKFNSHKYAV QHHRIHNKDR PLQCPWKGCT  1140
ISFKWAWART EHLRVHTGER PYVCKVQGCG LTFRFISDFS RHRRKTGHQM GFLILFHDLR  1200
IPRIPFDGVP AGGSCRTPSK LGSPGSVVEQ LDQEACSAMA ARRVLNLLAS KSHPHPLSRV  1260
ADISCIGTSA RHPSPTSGQY SRRFQSPAEP TPALPQELSE AGSGSSAPGT GILASAPANT  1320
ETTVIPQVNS KLKISERHDL VMVFTCKVCD TRSVKTACRE SYNKGVVIAR CDGCNNLHLM  1380
ADRLGWFGDP GSVEQFLASR GETVKKGSSD SLNITLEDIV GKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A3e-54286478150346Transcription factor jumonji (Jmj) family protein
6ip4_A3e-54286478150346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209217RRKRRRRKR
2210214RKRRR
3210217RKRRRRKR
4211216KRRRRK
5211217KRRRRKR
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678443586
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084321.10.0probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLS8CHQ10.0S8CHQ1_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.F01729.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48351721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]