PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678442506
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 402aa    MW: 43661.2 Da    PI: 9.779
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678442506genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-055577123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  678442506 55 FVCEICNKGFQRDQNLQLHRRGH 77
               89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.51E-75477No hitNo description
Gene3DG3DSA:3.30.160.601.3E-55477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9495577IPR007087Zinc finger, C2H2
SMARTSM003550.0175577IPR015880Zinc finger, C2H2-like
PfamPF121716.1E-55577IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM003554397127IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.6E-4120153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.51E-7127152No hitNo description
SMARTSM00355150132152IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MMSSEAFFVP TNPSSNTPLP PPAPPRKKRN LPGTPDPDAE VIALSPRSLM ATNRFVCEIC  60
NKGFQRDQNL QLHRRGHNLP WKLKQRNSKE ETRKKVYICP EKGCVHHDPS RALGDLTGIK  120
KHFSRKHGEK KWKCEKCSKK YAVHSDWKAH SKTCGTREYK CDCGTLFSRK DSFITHRAFC  180
DALAEERERV SKAHGGVGAL SFGGNLMSSQ GNYHSGGGGE FAGNTLFSDK ARLPLWMDLQ  240
GSNIFTASNQ GDAVQMHSGN LFNPMASYGN SALIPNAATG YSENLNFSKS SPAAPMSATA  300
LLQKAAQLGS TTLLGNSMRA MSSAASPGGS RDELHQARRA QSAVGAYSSP FHHGMQEVED  360
SLTRDFLGVG DDGGGRPFLP PEFARFASMN SGVGLAHFTS LP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35128191366Zinc finger protein JACKDAW
5b3h_F1e-35128191366Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18194KLKQRNSKEETRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678442506
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275477.31e-147PREDICTED: zinc finger protein JACKDAW
RefseqXP_010653553.11e-147PREDICTED: zinc finger protein JACKDAW
SwissprotO227591e-110IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLF6HR111e-146F6HR11_VITVI; Uncharacterized protein
STRINGVIT_08s0040g02100.t011e-147(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.12e-96indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]