PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678442371

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

G2-like

Protein Properties

Length: 336aa MW: 36711.7 Da PI: 5.9288

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678442371	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.6	2.4e-32	188	243	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W+peLH+rFv a+eqLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ 678442371 188 KSRRCWSPELHRRFVAALEQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 243 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.589	185	245	IPR017930	Myb domain
SuperFamily	SSF46689	4.78E-18	186	246	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.6E-29	186	246	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-26	188	243	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-7	190	241	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MVLNGHNHCG FSGKNRRCEE YMQALEEERR KIEVFQRELP LCLELVTQAI DSCKQQLSGT 60 TSECDFNGQS ECNSDHTSGE IPVFQELIPI KTSSLCEEHE LGDGDELEKS DWLRSVQLWH 120 NQTPDPVTKE TSPRKVAVVE VKGTGAFHPF KKDQTNKGGG TTSPNDIPAN PPPATGNKED 180 RDGQSHRKSR RCWSPELHRR FVAALEQLGG SHVATPKQIR ELMKVDGLTN DEVKSHLQKY 240 RLHTRRPSPT IQLSTANPPP QLAVVVSGIW ALPQEYATMA TSGEVGSGAA AAADNDICAP 300 IALKSSNSDN SGWPEDGDSP STSSSTQTTT GSPPLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-14	188	241	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-14	188	241	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-14	188	241	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-14	188	241	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-14	188	241	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-14	188	241	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-14	188	241	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-14	188	241	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-14	188	241	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-14	188	241	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-14	188	241	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-14	188	241	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678442371

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070832.1	1e-121	myb family transcription factor EFM
Swissprot	Q9FPE8	1e-82	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A2G9GW56	1e-118	A0A2G9GW56_9LAMI; Uncharacterized protein
STRING	VIT_01s0011g03110.t01	1e-107	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5219	24	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	2e-81	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]