PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678442361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | DBB | ||||||||
Protein Properties | Length: 251aa MW: 28070.7 Da PI: 4.3841 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21 | 7.1e-07 | 15 | 47 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 r C+++++ ++ l+C+ ++ lC C e H+ 678442361 15 RLCDLCNSSKALLYCRADSAKLCFHCDREAHST 47 78******99*********************65 PP | |||||||
2 | zf-B_box | 34.3 | 4.8e-11 | 59 | 100 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 C+ +++ + ++fC+++++ lC++C e+H++ H+++p+ 678442361 59 LCDACNSAPSSIFCFTDNVVLCQNCDWEIHSNlrgvHDRRPI 100 7*****************************88999**99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.3E-10 | 12 | 59 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.855 | 12 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.30E-5 | 15 | 46 | No hit | No description |
Pfam | PF00643 | 2.2E-5 | 15 | 54 | IPR000315 | B-box-type zinc finger |
SuperFamily | SSF57845 | 9.84E-5 | 53 | 101 | No hit | No description |
PROSITE profile | PS50119 | 10.111 | 55 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.5E-8 | 58 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.27E-7 | 59 | 100 | No hit | No description |
SMART | SM00336 | 0.12 | 60 | 100 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MSLLVKETNP CFGDRLCDLC NSSKALLYCR ADSAKLCFHC DREAHSTNQL FRKHLRSLLC 60 DACNSAPSSI FCFTDNVVLC QNCDWEIHSN LRGVHDRRPI EGFSGCPSVS DLLCFVGLED 120 LGKKSPVSED VDNLDLEWMD LLGWETPSVL CLEDLIVIND DFPIPEHSIQ SMTLPPLPKN 180 RNASCGKYKE EILTQLRQMA RTDPEFDGCL QDLEPTSEPP QADNSSDQQQ STISIPVTQG 240 ILSSFLAERV Q |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678442361 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079734.1 | 8e-92 | zinc finger protein CONSTANS-LIKE 13 | ||||
Swissprot | O82256 | 2e-66 | COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | A0A022S384 | 6e-87 | A0A022S384_ERYGU; Uncharacterized protein | ||||
TrEMBL | S8DS63 | 4e-87 | S8DS63_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.D00173.1.p | 9e-88 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7362 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.2 | 3e-69 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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