PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

SBP

Protein Properties

Length: 340aa MW: 37881.8 Da PI: 9.4593

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678442123	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	123.3	1.1e-38	112	189	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C vegC++dls+ak yhr+h+vCe hsk+ +v++sg+e+rfCqqCsrfh lsefD++krsCrrrL +hn+rrrk+q 678442123 112 RCIVEGCSVDLSSAKGYHRKHRVCEYHSKCFKVVISGVERRFCQQCSRFHILSEFDDKKRSCRRRLYDHNARRRKPQL 189 6**************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.5E-30	107	174	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.522	110	187	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.28E-37	111	192	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.4E-29	113	186	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010358	Biological Process	leaf shaping
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MGSIRDHAYA TKYSRTASVE SSIVDGGIQN PISRLMTSED FPKCSYMGTL IKDAEFFGTS 60 SLLAQASVGA LEPLIGLKLG KRTYFENTGT PSSLNLSTSS RHKSSFQNRI PRCIVEGCSV 120 DLSSAKGYHR KHRVCEYHSK CFKVVISGVE RRFCQQCSRF HILSEFDDKK RSCRRRLYDH 180 NARRRKPQLE TFHINAAALS SSFYGGKQMS FRLINGSACH SGELGSSVWD HTSSSPKFTI 240 TGGYPTKLGR GTRNSSHPEV APEHFGAYSL LSASHRDSRG VESVPFHCQG MPCAAEPVLH 300 GMHEHLLPFS YGEIPSSWSL PKIQTFRTPY ESDFYANTLK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-25	113	186	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	185	KKRSCRRRLYDHNARRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678442123

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086806.1	1e-78	squamosa promoter-binding-like protein 12
Refseq	XP_011086808.1	1e-78	squamosa promoter-binding-like protein 12
Refseq	XP_020551644.1	1e-78	squamosa promoter-binding-like protein 12
Swissprot	A2X0Q6	2e-52	SPL3_ORYSI; Squamosa promoter-binding-like protein 3
Swissprot	A3A2Z8	2e-52	SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBL	A0A075FJ54	2e-76	A0A075FJ54_SALMI; SQUAMOSA promoter binding protein-like 5 (Fragment)
STRING	Migut.K00951.1.p	1e-76	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4129	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	1e-46	squamosa promoter binding protein-like 2