PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678441933 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | Trihelix | ||||||||
Protein Properties | Length: 411aa MW: 46907.5 Da PI: 6.0388 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 72.2 | 9.5e-23 | 109 | 205 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +W++++v++L++a+++++e+ +++ +kk++W+++sk+m+++g+ +sp+qC++k+++lnk+yk++++ +++ ++e +++ +++d + 678441933 109 KWSDSMVKLLVTAVSYTNEEAAAECaggqrrkmitlQKKGKWKAISKVMADKGYFVSPQQCEDKFNDLNKKYKRLNDLLGRGtSCEIVENPSLLDMV 205 7*********************98888889999999*********************************************9558888888777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.0E-20 | 107 | 232 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MDVNLSSMSG MQSNSASCGR VFDLQGAMRP RHHNLQQEMF PGLGSQLGFT NNVHENIGSS 60 VNREQMVSAA DAGKPMSDDG EHSFMEEVSE GQNDANECKK GGSQWHRVKW SDSMVKLLVT 120 AVSYTNEEAA AECAGGQRRK MITLQKKGKW KAISKVMADK GYFVSPQQCE DKFNDLNKKY 180 KRLNDLLGRG TSCEIVENPS LLDMVDHISE KDKEEVKRIL SSKHLHYEEM CSYHNGNRLH 240 LPPDPELRNS LRVALMLRDD HDDEDNDMKC HLNDENGEGD HSSPLGSDKR VDDMVGSSNK 300 RAKHTVNSEN FIHKGFGCFH ANDPKRTTSG FTQAPQEQWT SHTNLQLEEH RLQIQEQMAQ 360 LEKERLKWLE FCMKEDEEFE GLKIEIQRMK VENERMALEL KQKEMLVNAT Y |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678441933 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074759.1 | 1e-143 | uncharacterized protein LOC105159405 | ||||
Refseq | XP_011101525.1 | 1e-143 | uncharacterized protein LOC105179584 isoform X1 | ||||
TrEMBL | A0A2G9GZ52 | 1e-144 | A0A2G9GZ52_9LAMI; Uncharacterized protein | ||||
STRING | XP_009799706.1 | 1e-125 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7600 | 18 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-103 | sequence-specific DNA binding transcription factors |