PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678441800
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 788aa    MW: 86050.5 Da    PI: 5.9255
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678441800genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23169270199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++p++ ae++      +++ + s++lt +d++g+ W++++iyr++++r++lt+GW+ Fv +++L +gD v+F   + +++el++
  678441800 169 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKEQ-RPSQELTAKDLHGQPWKFRHIYRGQPRRHLLTTGWSIFVGQKNLVSGDAVLFL--RGEDGELRL 265
                99****************************86333.45679************************************************..449999*** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +v+r+
  678441800 266 GVRRA 270
                **996 PP
2Auxin_resp86.26.4e-29295374182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +a a s++s+F+v+ +Pras+++Fv++++k++ ++ +++ +G+ fkm+f+ +ds+er+  G+v++v d+dp++WpnSkWrs+
   678441800 295 VAYAYSSNSPFSVFCSPRASHADFVIPYRKYVISTANQIPIGTSFKMRFNHDDSPERS--GVVTAVCDADPYSWPNSKWRSI 374
                 577899***************************************************9..********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-43161286IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-40162283IPR015300DNA-binding pseudobarrel domain
CDDcd100175.92E-22167269No hitNo description
PfamPF023621.7E-21169270IPR003340B3 DNA binding domain
PROSITE profilePS5086313.028169271IPR003340B3 DNA binding domain
SMARTSM010191.2E-21169271IPR003340B3 DNA binding domain
PfamPF065075.1E-23296374IPR010525Auxin response factor
PROSITE profilePS5174519.216662746IPR000270PB1 domain
SuperFamilySSF542771.86E-9663741No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MGIDLNHALG EKEKSDCVYG GMCDRFEGGN CVHGCLSASS SSCSSNVASG SSSPTSVSAP  60
ICKELWNACA GPLTSLPKKG NAVVYFPQGH LEQTFSASSV SSVEMGAFGV PPQIFCRVVD  120
VELLANREND EVYAKLTLLP VPEMAFDGEN GSSDGEVEAF PSKSASHMFC KTLTASDTST  180
HGGFSVPRRA AEDCFPPLDY KEQRPSQELT AKDLHGQPWK FRHIYRGQPR RHLLTTGWSI  240
FVGQKNLVSG DAVLFLRGED GELRLGVRRA ARSRNSLPDS VSKSHNSYAN VLSAVAYAYS  300
SNSPFSVFCS PRASHADFVI PYRKYVISTA NQIPIGTSFK MRFNHDDSPE RSGVVTAVCD  360
ADPYSWPNSK WRSIMVRWDV DALNNHQDRV SPWEISFSAN YVPLSVDSSP RVKKLKHDCS  420
LTGTDILAAG GGAVFNFEES MRPSKVLQGQ ENAGLVPPLY RTDWMNRKLD FEMPPNHAMN  480
MVDSKGYGEL VLNPHAPTTF TGFLESNWCP KVLQGQEICS LRSLTGNKDL NPGAWFQSEL  540
GYNVYPSNGL SPMIFYPLAS EGARNLTTLK PVDPPVPSNL LNNHLLNHVF VPNSGDNAGA  600
QGVIHEHTAV EEASAPTASP AHFNSTTGDH DASKDKATAC RIFGFSLAED PATGSIQGGS  660
KRSCIKVHKQ GSLVGRGVDL SRLDSYDDLL IELERLFGMD GLLRDPDKGW RVLFVDSEND  720
MLLVGDYPWH EFIEVATKLH LYTQEEAEKL SIVTNSDDAK SCLEEAPLSI LDLSKSPSVG  780
QPEYSRSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1115739515352Auxin response factor 1
4ldw_A1e-1115739515352Auxin response factor 1
4ldw_B1e-1115739515352Auxin response factor 1
4ldx_A1e-1115739515352Auxin response factor 1
4ldx_B1e-1115739515352Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678441800
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089883.10.0auxin response factor 4 isoform X1
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A191T8T20.0A0A191T8T2_SALMI; Auxin response factor
STRINGSolyc11g069190.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51432234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]