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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678441522 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | bHLH | ||||||||
Protein Properties | Length: 346aa MW: 38029.1 Da PI: 5.5692 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.5 | 2.7e-09 | 164 | 209 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+ + ++f+ L ++P kK++K ++L +++Y+k+Lq 678441522 164 HIIAERKRRELLGQRFSALSAIVPGI-----KKMDKNSVLGSTINYLKHLQ 209 899*********************97.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.27E-16 | 159 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.068 | 159 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.54E-9 | 164 | 213 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.9E-14 | 164 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.9E-7 | 164 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.9E-13 | 165 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MEMDSSALSE TVKQSPNCHT LPASRLRGNE QLFTGLEETC VFMDDLFDED ELADLQRSLE 60 AALAAPAPPE PTKKTKSSGS TRKKLCKGSS APIVISFGKL NGDQKNSEKR QTRGELTPEE 120 EAAVSEALRC SSSTAGRGDL PKAATAPPGK KNSRIRPPEQ TYDHIIAERK RRELLGQRFS 180 ALSAIVPGIK KMDKNSVLGS TINYLKHLQE QVQILEEKAE NQSRDWGVLV RKSLIDGFGK 240 NRGREDMNEE EEEQALPAVE ARIKEHEVVV RIQCEIQKGV LANLLREVED LHLAVVTANL 300 TALGGLALDI TINAEMEKEF NATGIEVATR LGAAIQRLAH RSPCEE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 172 | ERKRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678441522 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073652.1 | 3e-72 | transcription factor bHLH18-like | ||||
TrEMBL | A0A2G9I4F1 | 2e-67 | A0A2G9I4F1_9LAMI; Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1760 | 24 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-34 | bHLH family protein |