![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678441330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 241aa MW: 26717.9 Da PI: 8.2706 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.2 | 6e-29 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C++lr++C++dC+l p++ p++q++++ +++k++G++ +++l++a p++ ++++++sl+yeA+ r+ +Pv+Ga+g+++++ ++ +q++++++ 678441330 4 SCNGCRILRKGCSQDCILKPCIqwltsPESQANATLFLAKFYGRAGLVNLINAGPPHLHQEIFKSLLYEACGRIINPVHGAIGLMNSGDWERCQAAVDAV 103 6***********************************************************************************************9998 PP DUF260 96 llke 99 l+++ 678441330 104 LQGS 107 8765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.982 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-23 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MRMSCNGCRI LRKGCSQDCI LKPCIQWLTS PESQANATLF LAKFYGRAGL VNLINAGPPH 60 LHQEIFKSLL YEACGRIINP VHGAIGLMNS GDWERCQAAV DAVLQGSPVM MQATRDDDFD 120 LAQELHPVQA CDIRHIYRGA AADLHRVKMT NRFKRTSPGK NLEKLTLPRF QLIRNHSCFL 180 PEAKRFPIPD DSSSIETSPP ALLRPPPQAL QFKAEAPPCD IGLELTLGPN QFIQAYISAS 240 V |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678441330 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070804.1 | 2e-87 | LOB domain-containing protein 40-like | ||||
Swissprot | Q9M886 | 3e-59 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A2G9HYG4 | 1e-84 | A0A2G9HYG4_9LAMI; Uncharacterized protein | ||||
STRING | Migut.O00688.1.p | 3e-82 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-61 | LOB domain-containing protein 41 |