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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678440103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | bHLH | ||||||||
Protein Properties | Length: 295aa MW: 32486.8 Da PI: 6.8732 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.7 | 1e-13 | 118 | 164 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+ri++ +++Lr+llP+ +K +Ka+ L ++++++k+L 678440103 118 KSHSEAERRRRERIKTHLDKLRSLLPST-----TKTDKASLLAEVIQHVKEL 164 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.526 | 115 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-11 | 118 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.30E-5 | 118 | 167 | No hit | No description |
SuperFamily | SSF47459 | 3.66E-14 | 119 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-15 | 119 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-13 | 121 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 8.6E-4 | 201 | 256 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MLGFPCFDIQ MQQQNAAGDG YTGVWGGVAF PEVFQWNVPP VHNFSNPVRD HDPFLLPSPP 60 PPPPPCSFTR RPFGYDGGSS ENHLRLISES LGGFGLHAEL QKMTAQEIMD AKALAASKSH 120 SEAERRRRER IKTHLDKLRS LLPSTTKTDK ASLLAEVIQH VKELKRQTSQ IAETSAFPTE 180 VDELSVENAS DEAGKLVIKT SICCKDRADL LPDLISTLKA LKLKTLKAEI TTLGGRVKNV 240 LFITRDDDED SEALGQQQLS ISSIQEAFKS VMEKCNGDES GSGTVKRQRT NTSIK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 128 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678440103 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077316.1 | 1e-125 | transcription factor bHLH30 | ||||
Swissprot | Q9S7Y1 | 1e-78 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A2G9I1N8 | 1e-124 | A0A2G9I1N8_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_010668m | 1e-114 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4083 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 3e-57 | bHLH family protein |
Publications ? help Back to Top | |||
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