PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678438959

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bHLH

Protein Properties

Length: 306aa MW: 33662.6 Da PI: 7.7185

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678438959	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.5	6.3e-10	160	207	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka++L + ++Y++sLq 678438959 160 SHSLAERARREKISERMKYLQDLVPGC----SKVTGKAAMLDEIINYVQSLQ 207 8***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.84E-10	154	211	No hit	No description
SuperFamily	SSF47459	1.09E-16	154	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-17	156	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.739	156	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-7	160	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.3E-10	162	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MKSSWQRLVE VEKILNGDDG FWGLNEDHVA VGLMESGHTF FCDELQAVLN SGSVSQSHSE 60 SSYSIQRTLS SPPAGDVAGV GGSQRKRAGK SFKGGADVKP EKKKMKVCED EESRFSEQNS 120 NSNSKSTITA ADSSRKHPAA SGSDSNYIHV RARRGQATDS HSLAERARRE KISERMKYLQ 180 DLVPGCSKVT GKAAMLDEII NYVQSLQREV ELLSMKLAAV SPRLDHDIET NLPQEIYRSI 240 LPSADHFLLH SGISSAPLAL PTTFSDSRVQ QFSWENHIRD PFASSFIPRS FTGGFRGVGN 300 VKTEML

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	105	RKRAGKSFKGGADVKPEKKKMK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678438959

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088410.1	3e-62	transcription factor bHLH63 isoform X2
Swissprot	Q9C670	2e-47	BH076_ARATH; Transcription factor bHLH76
TrEMBL	A0A0H3YB62	1e-63	A0A0H3YB62_SALMI; Basic helix-loop-helix transcription factor
STRING	Aquca_010_00514.1	4e-51	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6538	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26260.3	6e-50	cryptochrome-interacting basic-helix-loop-helix 5

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]