PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678438276
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARR-B
Protein Properties Length: 454aa    MW: 51107.2 Da    PI: 5.2308
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678438276genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.97e-26195248155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr++Wt +LH++Fv+a++q+ GsekA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  678438276 195 KPRVVWTVDLHQKFVQALNQI-GSEKAGPKKILDLMGVPWLTRENVASHLQKYRL 248
                79*******************.9*******************************7 PP
2Response_reg80.74.9e-27171251109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+k +y ev+++  ++eal ll++++  +D+++ D++mp+mdG++ll+     e++lp+i+++  ge + + + ++ Ga 
     678438276  17 VLVVDDDPTWLKILEKMLKKCNY-EVTTCNLAREALFLLRQRKdgFDIVISDVNMPDMDGFKLLELVGL-EMDLPVIMMSVDGETSRVMRGVQHGAC 111
                   89*********************.***************888889*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el +
     678438276 112 DYLLKPIRMKELKN 125
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.1E-4314138No hitNo description
SuperFamilySSF521725.12E-3614136IPR011006CheY-like superfamily
SMARTSM004483.0E-3115127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.12516131IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.3E-2417125IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.02E-3018131No hitNo description
SuperFamilySSF466893.94E-18192252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27193252IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-23195249IPR006447Myb domain, plants
PfamPF002491.2E-7197247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MDSSWFSSIR FPAGLRVLVV DDDPTWLKIL EKMLKKCNYE VTTCNLAREA LFLLRQRKDG  60
FDIVISDVNM PDMDGFKLLE LVGLEMDLPV IMMSVDGETS RVMRGVQHGA CDYLLKPIRM  120
KELKNIWQHV LRKRVNEMRE IDCYEGVEGM NPLEGQYLFS GDYVTRKRRM DFESSVYDDR  180
DFSDASSSSC VTTKKPRVVW TVDLHQKFVQ ALNQIGSEKA GPKKILDLMG VPWLTRENVA  240
SHLQKYRLFL NRLEKEKEMK AAFAANISSK VSMRNVCLQR SPNHLASSTH QTTLGKETGE  300
ASFIPPSGPQ VSKSLVQPQC SWGMESPRAF ISDENCDDLQ YAPIESVGSS ALPHQGISKI  360
QAIEEVAKVG SAPPSSAYSA DMASCSQWSA EVLDQTSLVY EQHLGLWDDF QTHPSREELL  420
YPPFSGLQTV DSLGCISDQE LLADVHSQLD YPVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-19194253463ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169TRKRRM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678438276
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071178.11e-145two-component response regulator ORR26
SwissprotQ5N6V81e-116ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A022Q1S71e-139A0A022Q1S7_ERYGU; Uncharacterized protein
STRINGMigut.E00229.1.p1e-137(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-110response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]