PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678437822 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | DBB | ||||||||
Protein Properties | Length: 201aa MW: 22597.6 Da PI: 5.2753 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.5 | 4.8e-07 | 16 | 46 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 r C+++++ ++ l+C+ ++ lC +C e H 678437822 16 RLCDLCNSSKAFLYCRADSARLCFNCDREAH 46 68******99*******************99 PP | |||||||
2 | zf-B_box | 24.9 | 4.2e-08 | 59 | 101 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 C+ +++ + ++fC + ++ lC++C e H + H+++p+ 678437822 59 LLCDGCDSAPCSIFCSTESTVLCQNCDWELHGNfvtvHDRRPI 101 57*****************************669999999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.0E-10 | 13 | 60 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.6E-5 | 16 | 46 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.47E-5 | 16 | 60 | No hit | No description |
PROSITE profile | PS50119 | 10.011 | 17 | 60 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.395 | 56 | 101 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.09E-6 | 60 | 101 | No hit | No description |
SMART | SM00336 | 0.46 | 61 | 101 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MSFLPANGAR PWPCPRLCDL CNSSKAFLYC RADSARLCFN CDREAHFSNP LFQKHARSLL 60 CDGCDSAPCS IFCSTESTVL CQNCDWELHG NFVTVHDRRP IEGFSGCPSF TELLSFLGLE 120 DLTKKSDDEE DGWMDLLVWE TASVVNLDNA IVTKDSADSP HSFQAMDVPP LPKNRNAICG 180 KHKEDILRQL REMATNEHKL H |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678437822 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079734.1 | 9e-91 | zinc finger protein CONSTANS-LIKE 13 | ||||
Swissprot | O82256 | 2e-64 | COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | S8DS63 | 5e-87 | S8DS63_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.D00173.1.p | 1e-84 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7362 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.2 | 2e-67 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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