PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678436237
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 324aa    MW: 36746.1 Da    PI: 8.9433
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678436237genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016111127117
                EEETTTTEEESSHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                + C++C+k F+r+ nL+
  678436237 111 FCCSICSKFFNRHNNLQ 127
                78*************98 PP
2zf-C2H211.40.001253275123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++Cgk    k + ++H +++
  678436237 253 FTCGKCGKALAVKGDWRTHEKNC 275
                89*****************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEAPWPMCII TPSFIWELHP ATSFLKPSSG GSMDGAAFEP FDFFKEKPGS SGNGASTVDR  60
EQVESDNAAV ALRMGLPSTN NGDPKREVAP SWPTQFWIPS REEILLGFSL FCCSICSKFF  120
NRHNNLQVPL TFILCDHLLE WDRASFPFLH FYNGCVLWVF HILHHLHHDN RAIRFYYKMH  180
LWSHGSEFRK GPASLKGAPP PQHHHHHRAT GRVACFCCEQ GCKNNIEHPK ARPLKDFRTL  240
QTHYKRKHGA KDFTCGKCGK ALAVKGDWRT HEKNCGKRWL CVCGSDFKHK RSLKDHVAAF  300
GLGHGPACPI YFDVSVSRPS PSRP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678436237
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074196.14e-85protein TRANSPARENT TESTA 1
SwissprotQ9SGD18e-69ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2G9HH995e-80A0A2G9HH99_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.13e-71WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]