PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678435630
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 563aa    MW: 62041.7 Da    PI: 6.5587
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678435630genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.3e-07261281526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f + G C  Gd+C +aHg
  678435630 261 PCPEFKK-GACGKGDNCEYAHG 281
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.46E-1462150IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-1367151IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.376146IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.60376100IPR002110Ankyrin repeat
SMARTSM002480.006676106IPR002110Ankyrin repeat
PfamPF127962.7E-976141IPR020683Ankyrin repeat-containing domain
CDDcd002041.04E-1278149No hitNo description
PROSITE profilePS5008810.74111146IPR002110Ankyrin repeat
SMARTSM002480.0068111143IPR002110Ankyrin repeat
SMARTSM003564.2E-5256282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.277261283IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-4261281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4261282IPR000571Zinc finger, CCCH-type
SMARTSM0035656291314IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.094291315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MCGGGKGEAS PCDLEMEAEL HGEEGEEVRK FCTVLLELAA FDDLSGFLRE IEMGSSLDEV  60
GFWYCRSFGS NKMGFEERTP LMIASFYGST SILRYLVESG KVDVNRASAS DGATALHCAA  120
AGGSWSSLEV VKILIDAAGD VSALDFKGRR AGNLIPPRVK KSFNSLKWKR LEMLLNGVAG  180
DCEFDEEEEI AIQKKKEYPF DVSLPDINNG IYGTDEFRMY SFKVKPCSRA YSHDWTECPF  240
VHPGENARRR DLRKYHYSCV PCPEFKKGAC GKGDNCEYAH GVFESWLHPA QYRTRLCKDE  300
IGCSRKVCFF AHKPEELRQS YASTGMDLSP LSLGSPCSSP VGGGSLWQSK INPAPPALQL  360
PGSRLKVALS PRVADLDMNV LGFEEMANVS SPYSRMGTGG DLQQSNLEDV FGAYDHPSLI  420
SQMQGQSPKF SSNSASQLQS PTYRQNMNHL RSSFPSSISS AQLGIHGFDS SPAMAAAILH  480
SRSLAFTKRS QSFIHHGRAP LSSSANSPTL RPSIPSEWGS PNGKLDWRFN GDDDNKLRKS  540
SSFGIRSENR FQTGNIDEPE LHW
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678435630
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084902.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE61e-168C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2G9I5810.0A0A2G9I581_9LAMI; CCCH-type Zn-finger protein
STRINGGorai.011G289400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-161C3H family protein