PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

678435430

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 157aa MW: 17271.6 Da PI: 7.3453

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678435430	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	24	46	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C++ Fs+ L H++ H 678435430 24 FMCNFCKRGFSNAQALGGHMNIH 46 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.4E-4	22	48	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.65E-6	22	50	No hit	No description
PROSITE profile	PS50157	11.074	24	51	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	26	46	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MNVQQPSGKS VSWDGQSLVL SRSFMCNFCK RGFSNAQALG GHMNIHRKDR AKLIEFSEGN 60 LLSLDPTPKV IDYGEESGKE GCCADSPGDE KLITVEREAV CLEGEEAAKR VKVLGFGNGD 120 LDLELRLGPR LRQNPKLHDF MGLNSAGTEA QTRFSKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678435430

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006429146.1	2e-22	transcriptional regulator TAC1
TrEMBL	A0A2G9HHV4	4e-21	A0A2G9HHV4_9LAMI; Uncharacterized protein
STRING	XP_006429146.1	8e-22	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7463	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	1e-18	C2H2 family protein