PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678433258
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 182aa    MW: 19391.9 Da    PI: 7.1898
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678433258genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000684870123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y C+ C+k F++   L  H  +H
  678433258 48 YACKTCNKAFPSFQALGGHRASH 70
               89**********99999998887 PP
2zf-C2H2157e-05110132123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++Cg  Fs+   L  H+r+H
  678433258 110 HECSICGVAFSSGQALGGHMRRH 132
                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.84E-94770No hitNo description
PfamPF139121.8E-124872IPR007087Zinc finger, C2H2
PROSITE profilePS501579.5984870IPR007087Zinc finger, C2H2
SMARTSM003550.154870IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SuperFamilySSF576671.84E-9105132No hitNo description
Gene3DG3DSA:3.30.160.603.0E-4108132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.1E-12109133IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889110132IPR007087Zinc finger, C2H2
SMARTSM003550.017110132IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MTLQDHKTDE SSCSHLSTAS DEQEEEQDLA NCLILLANGG PVAAAEIYAC KTCNKAFPSF  60
QALGGHRASH RKVIKPPSPP KEKLDYSDGS SMLALAIAGA ASSSKAARAH ECSICGVAFS  120
SGQALGGHMR RHRPLPLPPS KKARNGLSLD LNLPAPEDQD HKEARFPQAL VFSTSPLVDC  180
QY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678433258
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077299.13e-53zinc finger protein ZAT5
SwissprotQ681X44e-37ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A4D9AIX12e-55A0A4D9AIX1_SALSN; Uncharacterized protein
STRINGXP_009613142.15e-47(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-35C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]