PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678430771
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family B3
Protein Properties Length: 385aa    MW: 41515.1 Da    PI: 8.6023
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678430771genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.97.3e-3262166199
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 
                f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l++
  678430771  62 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGvGElGKDRLFI 161
                89***************************966778999*************************************************6669999999999 PP

                EEE-S CS
         B3  95 kvfrk 99 
                 ++r+
  678430771 162 DWRRR 166
                99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-4252168IPR015300DNA-binding pseudobarrel domain
CDDcd100177.36E-2660149No hitNo description
SuperFamilySSF1019361.57E-2960165IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-2962166IPR003340B3 DNA binding domain
SMARTSM010192.0E-2262167IPR003340B3 DNA binding domain
PROSITE profilePS5086314.66362167IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MSGRPGFYQE MTGPRMSSSP SSLQPLDSPP IHVIDDDSET NRRGGEGGSS SSSSSVAREH  60
MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSTNEKGLL LNFEDRNGKP WRFRYSYWNS  120
SQSYVMTKGW SRFVKEKRLD AGDIVSFQRG VGELGKDRLF IDWRRRPDAP EIQPPFYSFS  180
ISNHHNQFPG LHRPIHPWSP LFLPSNSNPT QNPVLSASPH HHHRAAAAAA AAAAYGGYGY  240
NSVMSGNPCP VGSIFYLRSG GGGGGGGGAG GGYVAGVGPQ GQRGAEPMVF ESVPVVQGKA  300
AAKRLRLFGV NVDCPISESD DYDMMSSSTS PSTATLPLLH HFPATNFDSS PSSSSAPSDL  360
QLRPGYGHSR GDDKGKGSMS LDLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-66581674114B3 domain-containing transcription factor NGA1
5os9_B4e-66581674114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678430771
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081336.11e-130B3 domain-containing transcription factor NGA1 isoform X1
SwissprotQ8LMR94e-78Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A2G9G2U21e-130A0A2G9G2U2_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000318631e-114(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-68B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]