PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678430513

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C3H

Protein Properties

Length: 713aa MW: 77755 Da PI: 6.3071

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678430513	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.1	5.6e-07	308	328	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg 678430513 308 PCPDFRK-GACRHGDMCEYAHG 328 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12796	3.2E-11	78	152	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	7.96E-15	79	161	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.451	83	159	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.6E-16	83	162	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.024	83	113	IPR002110	Ankyrin repeat
CDD	cd00204	6.90E-13	85	161	No hit	No description
PROSITE profile	PS50088	10.099	118	153	IPR002110	Ankyrin repeat
SMART	SM00248	0.1	118	150	IPR002110	Ankyrin repeat
SMART	SM00356	1.8E-5	303	329	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.6E-4	307	330	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.169	308	330	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-4	308	328	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-4	336	366	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	66	338	361	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MCSGPEKAKS NSSPSQEAAD PSTTQGLNKL SGEMGDLVFS LLELAANNDI EALKRSLGTA 60 TLEVDCPGLW YTRNKESKKI IEEERTPLMV AASYGSVDVI KFLVTLPEVD LNRSCGQDKW 120 TALHCAASGG TVHAFDAVKL LLSAGSDPCI RDANGRRPVD VIVVPPKLPG ARNALEELLM 180 SNLSDGSFDE CKSRVSISSN SVSFPALSSS PETRSPCSPS EFMSSPMVTK PCGASANSFS 240 DKKQYPVDPS FPDIRDGVYS SDEFRMYSFK VRPCSRAYSH DWTECPFAHP GENARRRDPR 300 KYHYSCVPCP DFRKGACRHG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC DRQVCFFAHT 360 REELRPLYVS SGSGVPSPRS IASGPSSMDM AAAINALPGS PTSQSVMSPV FNQAMSPTAG 420 GMSHLTPPWT QANVPTLYLP GGNLQSSRLR SALNARDLPP EELCVLPDYD NQQFAYSEME 480 HFSQPRPNST LSFGRSNTTL TPSNLEELFS GDVASSPRFS DQTASFGAFS PTRKSAVLNQ 540 MHPQQRLLSP INTSNVFTPR NVERSFLQAS FGVSSPRISS PRSQEPASPV AARLTALAQQ 600 EKQQLQIRCP SSRANTAWLN FGSPNGRHDW PAGTDEANQR SSSFELKADG DEPDLSWVQS 660 LVKESPPEMM HKTATISSMA PAPSGDCPKP SLHVDPNDHS VVEAWLEQMQ LDS

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MCSGPEKAKS NSSPSQEAAD PSTTQGLNKL SGEMGDLVFS LLELAANNDI EALKRSLGTA  60
TLEVDCPGLW YTRNKESKKI IEEERTPLMV AASYGSVDVI KFLVTLPEVD LNRSCGQDKW  120
TALHCAASGG TVHAFDAVKL LLSAGSDPCI RDANGRRPVD VIVVPPKLPG ARNALEELLM  180
SNLSDGSFDE CKSRVSISSN SVSFPALSSS PETRSPCSPS EFMSSPMVTK PCGASANSFS  240
DKKQYPVDPS FPDIRDGVYS SDEFRMYSFK VRPCSRAYSH DWTECPFAHP GENARRRDPR  300
KYHYSCVPCP DFRKGACRHG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC DRQVCFFAHT  360
REELRPLYVS SGSGVPSPRS IASGPSSMDM AAAINALPGS PTSQSVMSPV FNQAMSPTAG  420
GMSHLTPPWT QANVPTLYLP GGNLQSSRLR SALNARDLPP EELCVLPDYD NQQFAYSEME  480
HFSQPRPNST LSFGRSNTTL TPSNLEELFS GDVASSPRFS DQTASFGAFS PTRKSAVLNQ  540
MHPQQRLLSP INTSNVFTPR NVERSFLQAS FGVSSPRISS PRSQEPASPV AARLTALAQQ  600
EKQQLQIRCP SSRANTAWLN FGSPNGRHDW PAGTDEANQR SSSFELKADG DEPDLSWVQS  660
LVKESPPEMM HKTATISSMA PAPSGDCPKP SLHVDPNDHS VVEAWLEQMQ LDS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678430513

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087691.1	0.0	zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A4D9C046	0.0	A0A4D9C046_SALSN; Uncharacterized protein
STRING	XP_009599703.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]