PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678427101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 244aa MW: 26827.2 Da PI: 7.831 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 97.3 | 1.2e-30 | 43 | 98 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 v+YkeC+kNhAa++GghavDGCgEfmp g++ + + l CaACgCHRnFHR+e+++ 678427101 43 VVEYKECMKNHAANMGGHAVDGCGEFMPPIGAH-EEKLLICAACGCHRNFHRQEPDT 98 589*************************96665.8999***************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.1E-26 | 44 | 96 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-15 | 44 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.0E-26 | 45 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.433 | 46 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-29 | 132 | 204 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.24E-18 | 133 | 200 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.5E-26 | 142 | 199 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
MDLDMEPPVS PEENEVETPP HAALPARPPP PHFAKNRLQG PVVVEYKECM KNHAANMGGH 60 AVDGCGEFMP PIGAHEEKLL ICAACGCHRN FHRQEPDTSA ISPPFLDFRR HSSPNPRSPR 120 VLFGFADNQA PVTPTAENLA GRKRFRTKFS QEQKDKMYSF SEKIGWKMHR CDESAVESFC 180 REIGVTRGVL KVWMHNNKNM AAKKDPRGGG SGGACMNTQE GKPSDIGGHF HFHGANDGSS 240 SSPS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-21 | 143 | 199 | 18 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678427101 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070997.1 | 2e-75 | zinc-finger homeodomain protein 10 | ||||
Swissprot | O64722 | 4e-48 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A4D8YIB3 | 3e-73 | A0A4D8YIB3_SALSN; Uncharacterized protein | ||||
STRING | Solyc05g007580.1.1 | 3e-57 | (Solanum lycopersicum) | ||||
STRING | XP_009788342.1 | 2e-57 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69600.1 | 6e-47 | zinc finger homeodomain 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|