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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678425846 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | Trihelix | ||||||||
Protein Properties | Length: 313aa MW: 37197.5 Da PI: 7.7389 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 35.8 | 2.1e-11 | 3 | 49 | 39 | 87 |
trihelix 39 rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +e g++rs k+C+ek+enl k+ykk++ +++ + + +++++f qlea 678425846 3 EEYGYQRSGKKCREKLENLYKYYKKTRLDNSRMQ--EGKHYKFFGQLEA 49 688****************************975..4456******985 PP | |||||||
2 | trihelix | 25.2 | 4.4e-08 | 207 | 262 | 6 | 60 |
trihelix 6 evlaLiearremeerlrrg.klkkplWeevskkmrergferspkqCkekwenlnkr 60 e Li++r+ m ++g +++ lWeev++km+ g +r+ ++ kekw+ +r 678425846 207 EMWRLIQVRSGMRAGGEDGvLSEEELWEEVARKMATFGHQRNGIMWKEKWDHYVTR 262 6778*************9835889**************************987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.7E-7 | 2 | 50 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MLEEYGYQRS GKKCREKLEN LYKYYKKTRL DNSRMQEGKH YKFFGQLEAL YGGASKSASM 60 EFGYFNNDIY TDPYSEHKSN YCDLVEISSG WSDVQKQNED RKGKKRRVKR SIENKIMNFI 120 DEQMTSVIEK QEMWMAKVVK TIEKREFERM LREEEWRKQD AARIEREHTY WANEKSWIEA 180 RDAALMEAFH QAATKQHSGA DKSPEYEMWR LIQVRSGMRA GGEDGVLSEE ELWEEVARKM 240 ATFGHQRNGI MWKEKWDHYV TRGNNKSKEN PATINHDDHP GTSSLYENLE GSYCDKGIEN 300 TKRQHHNHWG YGF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 108 | KKRRVK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678425846 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020547013.1 | 2e-77 | trihelix transcription factor PTL-like | ||||
TrEMBL | A0A2G9G8M2 | 6e-74 | A0A2G9G8M2_9LAMI; Transcription factor GT-2 | ||||
STRING | XP_009613783.1 | 4e-70 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3063 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 4e-46 | Trihelix family protein |