PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678423983
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family B3
Protein Properties Length: 378aa    MW: 42338.4 Da    PI: 6.4459
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678423983genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.65.9e-1049114172
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                f+k+l++s+ + +  l lpkkf+++h  +   + t++l de+g+++  ++++rk++    l++GW++   +n
  678423983  49 FLKQLLKSHLSGKFYLGLPKKFCDSHLPD--HDDTVVLVDEDGQEYLTRYSVRKNR----LSGGWRGKLTEN 114
                89************************433..3459***************777777....9****9876666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1143135IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1243108IPR015300DNA-binding pseudobarrel domain
CDDcd100178.16E-1647119No hitNo description
PfamPF023622.0E-749114IPR003340B3 DNA binding domain
SMARTSM010191.8E-749137IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MNMLLCIIWC SNEAKVTSMS ADPHLDVQSC VLDGTQGVQG NPSAECPSFL KQLLKSHLSG  60
KFYLGLPKKF CDSHLPDHDD TVVLVDEDGQ EYLTRYSVRK NRLSGGWRGK LTENDGDMVF  120
QTPESKNPLP VVIYEEKLGE GGRTNGKAKR VHPNSFAVDS LEETRRTRVM PDSSLASIHS  180
GNLNDESSSS MIQSMNGTSL DSKFKDIRDF GAFLIKVDGF ILDAEIPIDV RTRYYHLCCS  240
QKMFLHDHLI RGLSRNLAVT MIIETVGIAD AVRSSNLTIS LHHLECWEKT LKAFMDLGME  300
VGFLRGRLHK LISLSHEYLS NIETRRAKIV QADEEISSLE TSCTLNVLAK NLESEVKSLI  360
LKNDMLSLEY QRLAGAPW
Cis-element ? help Back to Top
SourceLink
PlantRegMap678423983
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836957.11e-123PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLS8E6B61e-117S8E6B6_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.B00331.1.p1e-122(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30232343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-21B3 family protein